Earth Sciences Division (ESD) Department of Energy (DOE) Lawrence Berkeley National Laboratory (LBNL)

Jil T. Geller's Publications

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Publications

    1. Walian, Peter; Allen, Simon; Shatsky, Maxim; Zeng, Lucy; Szakal, Evelin; Liu, Haichuan; Hall, Steven; Fisher, Susan; Lam, Bonita; Singer, Mary; Geller, Jil; Brenner, Steven; Chandonia, John-Marc; Hazen, Terry; Witkowska, H.; Biggin, Mark; Jap, Bing, High-throughput Isolation and Characterization of Untagged Membrane Protein Complexes – Outer Membrane Complexes of Desulfovibrio vulgaris, Journal of Proteome Research, accepted for publication, September 18, 2012. 
    2. R. Han, J. T. Geller, L. Yang, E. L. Brodie, R. Chakraborty, J. T. Larsen, H. R. Beller, Physiological and transcriptional studies of Cr(VI) reduction under aerobic and denitrifying conditions by an aquifer-derived pseudomonad, Environ. Sci. Technol., 2010, 44 (19), pp 7491–7497.
    3. Knight, R., L. Pyrake-Nolte, L. Salter, E. Atekwana, A. Endres, J. Geller, D. Lesmes, S. Nakagawa, A. Revel, M. Sharma, C. Straley, Geophysics at the interface: the response of geophysical properties to solid-fluid, fluid-fluid and solid-solid interfaces, Rev. Geophys., 48, 30 pp., December, 2010, RG4002, doi:10.1029/2007RG00024.
    4. Han, B-G, M. Dong, H. Liuc, L. Camp, J. Geller, M. Singer, T. C. Hazen, M. Choi, H. E. Witkowska, D. A. Ball, D. Typke, K. H. Downing, M. Shatsky, S. E. Brennere, J-M. Chandonia, M. D. Biggin, R. M. Glaeser, Survey of large protein complexes in D. vulgaris reveals great structural diversity, Proceedings of the National Academy of Sciences, 106(39), 16580-16585, Sept 11, 2009, doi:10.1073/pnas.0813068106.
    5. A. Mukhopadhyay, A. M. Redding, M. P. Joachimiak, A. P. Arkin, S, E. Borglin, P. S. Dehal, R. Chakraborty, J. T. Geller, T. C. Hazen, Q. He, D. C. Joyner, V. J. J. Martin1, J. D. Wall ,Z. Koo Yang, J. Zhou, J. D. Keasling, Cell wide responses to low oxygen exposure in Desulfovibrio vulgaris Hildenborough, J. Bacteriol., 189(16), 5996-6010, August 2007, doi:10.1128/JB.00368-07
    6. Ajo-Franklin, J. B., J. T. Geller, and J. M Harris (2007), Ultrasonic properties of granular media saturated with DNAPL/water mixtures, Geophys. Res. Lett., 34, L07404, doi:10.1029/2006GL029200.
    7. Ajo-Franklin, J. B., J. T. Geller and J. M. Harris , A Survey of the Geophysical Properties of Dense Chlorinated Solvents, LBNL-56061, Journal of Applied Geophysics, Vol. 59, No.3, pp. 177-189, July 2006.
    8. T.P.A. Ferre, A. Binley, J. Geller, E. Hill, T Illangasekare, Hydrogeophysical Methods at the Laboratory Scale, In “Hydrogeophysics,” Y. Rubin and S. Hubbard, Editors, Water Science and Technology Library, Volume 50, Springer, Dordrecht, the Netherlands, 2005.
    9. Ajo-Franklin, B., J. T. Geller and J. M. Harris, The Dielectric Properties of Granular Media Saturated with DNAPL/Water Mixtures, Geophysical Research Letters, REPORT NUMBER: LBNL-55982, Geophysical Research Letters, 31(L17501), 4PP., doi:10.1029/2004GL020672, September, 2004.
    10. Su, G., J.T. Geller, J.R. Hunt, and K. Pruess, Small-scale features of gravity-driven flow in unsaturated fractures. Vadose Zone Journal, 3:592-601, 2004. Berkeley Lab Report LBNL-50691, 2002.
    11. Geller, J. T., E. L. Majer, J. E. Peterson, K. H. Williams, and S. Flexser, Mapping DNAPL Transport and Contamination in Sedimentary  and Fractured Rock Aquifers with High Resolution Borehole Seismic Imaging, FY01 Annual Report, LBNL Report 49385, Lawrence Berkeley National Laboratory, Berkeley,  CA 94720, December, 2001.
    12. Geller, J. T., S. E. Borglin, B. A Faybishenko, Experiments and Evaluation of Chaotic Behavior of Dripping Water in Fracture Models, LBNL Report 48394, Lawrence Berkeley National Laboratory, Berkeley,  CA 94720, June, 2001.
    13. Su, G. W., J. T. Geller, K. Pruess, and J. R. Hunt,,Solute Transport Along Preferential Flow Paths in Unsaturated Fractures, Water Resources Research, Vol. 37(10),2481-2491, October, 2001.
    14. B. Faybishenko, P.A. Witherspoon, C.Doughty, J.T. Geller, T.R. Wood, and R.K. Podgorney, Multi-Scale Investigations of Liquid Flow in a Fractured Basalt Vadose Zone, In "Flow and Transport Through Unsaturated Fractured Rock," D.D. Evans, T.J. Nicholson, and T.C. Rasmussen, Editors, Geophysical Monograph 42, Second Edition, pp. 161-182, 2001.
    15. Geller, J. T., M. B. Kowalsky, P. K. Seifert and K. T. Nihei, Acoustic Detection of Immiscible Liquids in Sand, Geophysical Research Letters, Vol. 27(3), 417-420, 2000. Berkeley Lab Report LBNL-42791, 1999.
    16. Geller, J. T., H-Y. Holman, G. Su, M. S. Conrad, K. Pruess and J. C. Hunter-Cevera, Flow dynamics and potential for biodegradation of organic contaminants in fractured rock vadose zone, Journal of Contaminant Hydrology, 43(1), pp. 63-90, 2000, Berkeley Lab Report LBNL -52587
    17. Su, G., J. T. Geller, K. Pruess, F. Wen, Experimental studies of water seepage and intermittent flow in unsaturated, rough-walled fractures, Water Resources Research, Vol. 35(4), 1019-1038, 1999.
    18. Geller, J. T., Laboratory Studies of Groundwater Degassing in Replicas of Natural Fractured Rock for Linear Flow Geometry, LBNL Report 41386, February, 1998.
    19. Geller, J. T., G. Su, H-Y. Holman, M. Conrad, T-S. Liou, K. Pruess and J. C. Hunter-Cevera, Processes Controlling the Migration and Biodegradation of Non-aqueous Phase Liquids (NAPLs) within Fractured Rocks in the Vadose Zone.  FY97 Annual Report, LBNL Report 41387, February, 1998.
    20. Seifert, P. K., J. T. Geller and L. R. Johnson, Effect of P-wave scattering on velocity and attenuation in unconsolidated sand saturated with immiscible liquids, Geophysics, 63(1), 161-170, 1998.
    21. Geller, J. T., G. Su, H-Y. Holman, M. Conrad, K. Pruess and J. C. Hunter-Cevera, Processes Controlling the Migration and Biodegradation of Non-aqueous Phase Liquids (NAPLs) within Fractured Rocks in the Vadose Zone.  FY96 Annual Report, LBNL Report 39996, February, 1997.
    22. Geller, J. T., G. Su and K. Pruess, Preliminary Studies of Water Seepage through Rough-Walled Fractures, LBNL Report 38810, July, 1996.
    23. Jarsjö, J. and J. T. Geller, Groundwater degassing:  laboratory experiments in rock fracture replicas with radial flow, Äspö Hard Rock Laboratory Progress Report HRL-96-12, SKB, Stockholm, Sweden, April 1996.
    24. Geller, J. T. and L. R. Myer, Ultrasonic imaging of organic liquid contaminants in unconsolidated porous media, Journal of Contaminant Hydrology, 19(3), 1995.
    25. Geller, J. T. and J. Jarsjö, Groundwater Degassing and Two-Phase Flow Pilot Hole Test Report, LBL Report 37004, 1995.
    26. Geller, J. T., C. Doughty, R. J. Glass and J.C.S. Long, Disturbed Zone Effects:  Two-phase flow in regionally water-saturated fractured rock, LBNL Report 36848, 1995.
    27. Geller, J. T. and J. R. Hunt, Mass transfer from non-aqueous phase organic liquids in water-saturated porous media, Water Resources Research, Vol. 29, No. 4, pp. 833-845, 1993.
    28. Geller, J. T., Dissolution of Non-aqueous Phase Organic Liquids in Porous Media, Ph.D. Dissertation, Department of Civil Engineering, University of California, Berkeley, California, 1990.

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      Manuscripts

      1. J. T. Geller, D. C. Joyner, E. L. Brodie, Johann Gagnon-Bartsch and T. C. Hazen. High-throughput Assessment of Amendments in Uranium- and Nitrate-contaminated Groundwater and Soil, in preparation.

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      Abstracts and Conference Proceedings

        1. Lee, S., Tarjan, D., Geller, J., Singer, M.E., Wu, C., Torok, T., Hazen, T.C., Hillson, N.J., and Arkin, A.P., Assessing and Mitigating the Biological Risks of Genetically Modified Bacteria in the Environment (1st & 3rd authors contributed equally), to be presented at 112th General Meeting of the American Society for Microbiology, San Francisco, CA, June 16-19, 2012. 
        2. H. Liu; S. Allen; M. Dong; M. Shatsky; L. L. Yang; E. D. Szakal; M. Cho; B. Gold; N. L. Liu; L. Zeng; T. R. Juba; B. R. Lam; S. Reveco; R. Niles; S. C. Hall; S. J. Fisher; J. T. Geller; S. R. Chhabra; T. C. Hazen; S. E. Brenner; J. D. Wall; P. J. Walian; J. Jin; B. Jap; G. P. Butland; J.-M. Chandonia; M. D. Biggin; H. E. Witkowska, Global Analysis of the Protein Interactome of Desulfovibrio vulgaris using Combined Immunoaffinity and Tagless Approaches- Mass Spectrometric Perspective, to be presented at the 112th General Meeting of the American Society for Microbiology, San Francisco, CA, June 16-19, 2012.
        3. H. Liu; S. Allen; M. Dong; M. Shatsky; L. L. Yang; E. D. Szakal; M. Cho; B. Gold; N. L. Liu; L. Zeng; T. R. Juba; B. R. Lam; S. Reveco; R. Niles; S. C. Hall; S. J. Fisher; J. T. Geller; S. R. Chhabra; T. C. Hazen; S. E. Brenner; J. D. Wall; P. J. Walian; J. Jin; B. Jap; G. P. Butland; J.-M. Chandonia; M. D. Biggin; H. E. Witkowska, Global Analysis of Protein Interactome of Desulfovibrio vulgaris using a Combination of Immunoaffinity and Tagless Approaches, presented at the 60th ASMS Conference, Vancouver, Canada, May 20-24, 2012.
        4. M. Auer, P. Arbeleaz, N Baliga, D. A. Ball, M. Biggin, J.M. Chandonia, S. Chhabra, R. Csencsits, K.H. Downing, M.W. Fields, J.T. Geller, R. Glaeser, A. Gorur, T.C. Hazen, G.L Hura, T. Juba, B. Lam, C.M. Leung, J. Liphardt, J. Malic, T. Northen, J.P. Remis, S. Reveco, J. Tainer, A. Tauscher, J.Wall, ENIGMA Biotechnology: Biofilm imaging: from protein complexes to intact microbial communities, presented at the 2012 Genomic Science Awardee Meeting X, Bethesda, Md., February 26-29, 2012.
        5. PJ Wailian, S Allen, M Shatsky, L Zeng, ED Szakal, H Liu, B Lam, JT Geller, KL Hillesland, SC Hall, SJ Fisher, MW Fields, DA Stahl, TC Hazen, SE Brenner, AM Deautschbauer, TR Northen, J-M Chandonia, HE Witkowska, MD Biggin, BK Jap and PD Adams, ENIGMA Biotechnology:  Membrane Protein Complexes – Their Roles in Desulfovibrio vulgaris Stress Response and in the Establishment and Maintenance of Communities, presented at the 2012 Genomic Science Awardee Meeting X, Bethesda, Md., February 26-29, 2012.
        6. TC Hazen, MW Fields, J Zhou, JV Nostrand, DA Elias, JJ Mosher, SD Brown, TJ Phelps, M Podar, AV Palumbo, RA Hurt, A Singh, E Alm, MB Smith, DC Joyner, R Chakraborty, B Faybishenko, K DeLeon, J Geller, B Lam, T Torok, J Fortney, SE Borglin, D Stahl, J Wall, AP Arkin and PD Adams, ENIGMA Environmental Overview: Field to Lab to Field, 2012 Genomic Science Awardee Meeting X, Bethesda, Md., February 26-29, 2012.
        7. R Chakraborty, SE Borglin, B Faybishenko, P Dehal, AP Arkin, TC Hazen, MW Fields, J Geller, J Fortney, D Joyner, M Conrad and PD Adams, ENIGMA Environmental Microbiology:  Effect of Nitrate Stress on Metal-Reducing Microbes and Results of Nitrate Push/Pull Field Tests at Hanford 100H, presented at the 2012 Genomic Science Awardee Meeting X, Bethesda, Md., February 26-29, 2012.
        8. WA Lancaster, I Scott, B Vacarro, AL Menon, FL Poole, J Geller, JJ Mosher, TC Hazen, DA Elias, MWW Adams, AP Arkin and P Adams, ENIGMA Microbial physiology:  Assimilatory and Dissimilatory Metallomics of Desulfovibrio vulgaris and Pelosinus Strain A11, presented at the 2012 Genomic Science Awardee Meeting X, Bethesda, Md., February 26-29, 2012.
        9. J-M Chandonia, M Shatsky, M Dong, H Liu, L Yang, JT Geller, M Choi, B Gold, NL Liu, M Khairy, S Revoco, TR Juba, BR Lam, ED Szakal, S Allen, S Kumar, FL Poole, SE Brenner SC Hall, SJ Fisher, M Adams, TC Hazen, JD Wall, S Chhabra, J Jin, HE Witkowska, AP Arkin, GP Butland, MD Biggin and PD Adams, ENIGMA Microbial Physiology: Accurate, High-Throughput Identification of Stable Protein Complexes in Desulfovibrio vulgaris, presented at the 2012 Genomic Science Awardee Meeting X, Bethesda, Md., February 26-29, 2012.
        10. J Geller, S Lee, D Tarjan, C Wu, T Torok, TC Hazen, AP Arkin and NJ Hillson, ELSI Pilot: Assessing and Mitigating the Risks of Large-Scale Metabolic Engineering, presented at the 2012 Genomic Science Awardee Meeting X, Bethesda, Md., February 26-29, 2012.
        11. R. Han, L. Qin, J. Geller, R. Chakraborty, J. N. Christensen, and H. R. Beller, Biomolecular and isotopic signatures related to Cr(VI) reduction by a sulfate-reducing bacterium isolated from the Hanford 100H aquifer, presented at the American Geophysical Fall Meeting, San Francisco, CA, December 5-9, 2011.
        12. Terry Hazen, Boris Faybishenko, Harry Beller, Eoin Brodie, Eric Sonnenthal, Carl Steefel, Joern Larsen, Mark Conrad, Markus Bill, John Christensen, Shaun Brown, Dominique Joyner, Sharon Borglin, Jil Geller, Romy Chakraborty, Peter Nico, Philip Long, Darrell Newcomer, Evan Arntzen. Comparison of Field Groundwater Biostimulation Experiments Using Polylactate and Lactate Solutions at the Chromium-Contaminated Hanford 100-H Site, presented at the American Geophysical Fall Meeting, San Francisco, CA, December 5-9, 2011.
        13. H Liu ; M Dong; LL Yang; M Shatsky; M Choi; M Khainovski; S Allen; ED Szakal; SC Hall; SJ Fisher; TC Hazen; JT Geller; ME Singer; J-M Chandonia; J Jin; MD Biggin; HE Witkowska, Improved Experimental Protocols and Data Analysis Tools for High-Throughput Protein Complex Identification in Bacteria Using a Quantitative "Tagless" Strategy, presented at the 110th General Meeting of the American Society for Microbiology, New Orleans, LA, May 21-24, 2011.
        14. S Allen1; PJ. Walian2; L Zeng2; H Liu1; ED. Szakal1; SC. Hall1; SJ. Fisher1; RSantos2; B Lam2; JT. Geller2; J-M Chandonia2; TC. Hazen2; BK. Jap2; MD. Biggin2; HE Witkowska1 High-Throughput Pipeline for the Purification and Identification ofDesulfovibrio vulgaris (Hildenborough) Membrane Protein Complexes. presented at the 110th General Meeting of the American Society for Microbiology, New Orleans, LA, May 21-24, 2011
        15. R. Han, J. T. Geller, E. L. Brodie, R. Chakraborty, L. Yang, J. Larsen, H. R. Beller; Physiological and Transcriptional Studies of Cr(VI) Reduction by Desulfovibrio vulgaris Strain RCH1 Under Sulfate-Reducing Conditions, 110th General Meeting of the American Society for Microbiology, New Orleans, LA, May 21-24, 2011.
        16. Gorur, A., C. M. Leung, A. Tauscher, D. Jorgens, S. Reveco, J. Remis, B. Lam, J. T. Geller, T. C. Hazen, T. Juba, S. Chhabra, J. Wall, M. Biggin, K. H. Downing, M. Auer1,High Throughput Subcellular Protein Expression and Localization Studies in the Anaerobic Sulfate Reducer Desulfovibrio vulgaris, 110th General Meeting of the American Society for Microbiology, New Orleans, LA, May 21-24, 2011.
        17. Geller, J. T., H. Woo, D. C. Joyner, S. Kendall, T. C. Hazen, Microfluidic Studies of Nitrate Stress on Shewanella oneidensis Biofilms, 110th General Meeting of the American Society for Microbiology, New Orleans, LA, May 21-24, 2011.
        18. Walian, P. J. , S. Allen, L. Zeng, E. Szakal, S. C. Hall, S. J. Fisher, R. Santos, B. Lam, J. T. Geller, T. C. Hazen, J. M. Chandonia, H. E. Witkowska, M. D. Biggin, B. K. Jap, High-throughput Pipeline for the Purification and Identification of Desulfovibrio vulgaris Membrane Protein Complexes, 110th General Meeting of the American Society for Microbiology, New Orleans, LA, May 21-24, 2011.
        19. Chandonia, J-M., M. Dong, M. Shatsky, H. Liu, S. E. Brenner, L. Yang, T. C. Hazen, J. T. Geller, M. Choi, E. D. Szakal, J., H. E. Witkowska, A. P. Arkin, M. D. Biggin, Accurate, High-Throughput Identification of Stable Protein Complexes Using a Tagless Strategy, 110th General Meeting of the American Society for Microbiology, New Orleans, LA, May 21-24, 2011.
        20. Chhabra, S., B. Gold, N. L. Liu, S. Reveco, T. R. Juba, J. D. Wall, B. R. Lam, J. T. Geller, T. C. Hazen, M. Choi, M. D. Biggin, E. D. Szakal, S. Allen, H. Witkowska, J-M. Chandonia, G. P. Butland, Engineering Desulfovibrio vulgaris Hildenborough for High Throughput Tandem Affinity Purification of Protein Complexes, 110th General Meeting of the American Society for Microbiology, New Orleans, LA, May 21-24, 2011.
        21. Hazen, T. C., B. Faybishenko*, H. Beller, E. Brodie, E. Sonnenthal, C. Steefel, J. Larsen, M. Conrad, M. Bell, J. Christensen, S. Brown, D. Joyner, S. Borglin, J. Geller, R. Chakraborty, P. Nico, P. Long, D. Newcomer, and E. Arntzen.   Contributed.  Comparison of Field Groundwater Biostimulation Experiments Using Polylactate and Lactate Solutions at the Chromium Contaminated Hanford 100-H Site.  June 27, 2011, Reno, NV.  The International Symposium on Bioremediation and Sustainable Environmental Technologies.
        22. Walian, P. J., S. Allen, L. Zeng, E. D. Szakal, H. Liu, S. C. Hall, S. J. Fisher, R. Santos, B. Lam, J. T. Geller, T. C. Hazen, J.-M. Chandonia, H. E. Witkowska, M. D. Biggin, and B. K. Jap.  Invited.  High-Throughput Pipeline for the Purification and Identification of Desulfovibrio vulgaris Membrane Protein Complexes.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.
        23. Chandonia, J.-M., M. Dong, M. Shatsky, H. Liu, L. Yang, T. C. Hazen, J. T. Geller, M. Choi, E. D. Szakal, S. Allen, S. E. Brenner, S. C. Hall, S. J. Fisher, S. Kumar, F. L. Poole, M. Adams, J. Jin, H. E. Witkowska, A. P. Arkin, and M. D. Biggin.  Invited.  Accurate, High-Throughput Identification of Stable Protein Complexes in Desulfovibrio vulgaris using a Tagless Strategy.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.
        24. Butland, G. P., S. R. Chhabra, B. Gold, N. L. Liu, S. Reveco, T. R. Juba, J. D. Wall, B. R. Lam, J. T. Geller, T. C. Hazen, M. Choi, M. D. Biggin, E. D. Szakal, S. Allen, H. Liu, H. E. Witkowska, and J.-M. Chandonia.  Invited.  High Throughput Identification of Protein Complexes from Desulfovibrio vulgaris by a Tandem Affinity Purification Pipeline.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.
        25. Gorur, A., C. M. Leung, S. Chhabra, T. Juba, A. Tauscher, S. Reveco, J. P. Remis, B. Lam, J. T. Geller, T. C. Hazen, M. Biggin, J. M. Chandonia, K. H. Downing, J. Wall, and M. Auer.  Invited.  Subcellular Localization of Proteins in the Anaerobic Sulfate Reducer Desulfovibrio vulgaris via SNAP-Tag Labeling and Photoconversion.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.
        26. Gorur, A., C. M. Leung, D. Jorgens, A. Tauscher, J. P. Remis, D. A. Ball, S. Chhabra, V. Fok, J. T. Geller, M. Singer, T. C. Hazen, T. Juba, D. Elias, J. Wall, M. Biggin, K. H. Downing, and M. Auer.  2010.  Subcellular localization of proteins in the anaerobic sulfate reducer Desulfovibrio vulgaris via SNAP-tag labeling and photoconversion, extended abstract of paper presented and Microscopy and Microanalysis 2010 in Portland Oregon, August 1-5, 2010, Microscopy & Microanalysis (2010) 16:864-865.
        27. S. Borglin, J. Geller, R. Chakraborty, T. Hazen, O. Mason; Development of Extraction Techniques for the Detection of Signature Lipids from Oil, 110th General Meeting of the American Society for Microbiology, San Diego, CA, May 23-27, 2010, ISBN:978-1-5581-623-0, Abstract N-2765
        28. M. Dong, B-G. Han, H. Liu, J. Malik, J. T. Geller, L. Yang, M. Choi, J-M. Chandonia, P. Arbelaez, H. J. Sterling, D. Typke, M. Shatsky, S. Brenner, S. Fisher, E. R. Williams, E. D. Szakal, S. Allen, S. C. Hall, T. C. Hazen, H. E. Witkowska, J. Jin, R. M. Glaeser, M. D. Biggin, Tagless Protein Complex Identification: A Novel High Throughput Strategy to Purify Protein Complexes and Identify Them by Mass Spectrometry, 110th General Meeting of the American Society for Microbiology, San Diego, CA, May 23-27, 2010, ISBN:978-1-5581-623-0, Abstract Q-2352
        29. J. T. Geller, S. E. Borglin, J. L. Fortney, B. R. Lam, T. C. Hazen, M. D. Biggin Large-Scale, Continuous-Flow Production of Stressed Biomass (Desulfovibrio vulgaris Hildenborough), 110th General Meeting of the American Society for Microbiology, San Diego, CA, May 23-27, 2010, ISBN:978-1-5581-623-0, Abstract I-3057
        30. R. Han, E. Brodie, S. Brown, R. Chakraborty, J. Christensen, J. Geller, H. R. Beller; Physiological, Isotopic, and Transcriptional Studies of Cr(VI) Reduction Under Aerobic and Denitrifying Conditions by an Aquifer-Derived Pseudomonad, 110th General Meeting of the American Society for Microbiology, San Diego, CA, May 23-27, 2010, ISBN:978-1-5581-623-0, Abstract Q-2337
        31. M. P. Joachimiak, R. Chakraborty, A. Zhou, J. L. Fortney, J. T. Geller, J. Wall, J. Zhou, A. P. Arkin, T. C. Hazen, J. D. Keasling, S. R. Chhabra; Revisiting modes of energy generation in sulfate reducing bacteria, 110th General Meeting of the American Society for Microbiology, San Diego, CA, May 23-27, 2010, ISBN:978-1-5581-623-0, Abstract K-283.
        32. Hazen, T. C., B. Faybishenko, H. Beller, E. Brodie, S. S. Hubbard, J. Peterson, E. Sonnenthal, C. Steefel, L. Yang, J. Larsen, M. Conrad, J. Christensen, S. Brown, D. Joyner, S. Borglin, J. Geller, R. Chakraborty, P. Nico, T. Tokunaga, J. Wan, M. Firestone, P. Long, D. Newcomer, and L. N’Guessan.  Invited.  Field-Scale Investigations of Cryptic Growth and Memory Response Hypotheses at the Chromium Contaminated Hanford 100-H Site.  April 2009, Lansdowne, VA.  4th Annual DOE-ERSP PI Meeting.
        33. Dong, M., M. Daly, H. Liu, S. Allen, E. Szakal, S. C. Hall, S. J. Fisher, T. C. Hazen, J. T. Geller, M. E. Singer, L. L. Yang, J. Jin, H. E. Witkowska*, and M. D. Biggin.  Invited.  Analysis of an Intact Dissimilatory Sulfite Reductase Protein Complex from Desulfovibrio vulgaris using an Ion Mobility QTOF Analyzer.  February 2009, Bethesda, MD.  Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.
        34. Liu, H., L. Yang, N. Khainovski, M. Dong, E. D. Szakal, M. Choi, S. Allen, T. C. Hazen, J. T. Geller, M. E. Singer, P. Walian, B. Jap, S. C. Hall, S. J. Fisher, H. E. Witkowska, J. Jin, and M. D. Biggin.  Invited.  Protein Complex Analysis Project (PCAP): Introduction of Iterative MS/MS Acquisition (IMMA) to the MALDI LC MS/MS Workflow To Enable High Throughput Protein Complex Identification using Tagless Strategy.  February 2009, Bethesda, MD.  Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.
        35. Hazen, T. C., G. Anderson, S. Borglin, E. Brodie, S. van Dien, M. Fields, J. Fortney, J. Geller, E. Hendrickson, K. L Hillesland, H.-Y. Holman, J. Leigh, T. Lie, J. Jacobsen, D. Joyner, R Chakraborty, M. Keller, A. Mukhopadhyay, C. Schadt, D. Stahl, S. Stolyar, C. Walker, J. Wall, Z. Yang, H.-C. B. Yen, G. Zane, and J. Zhou.  Invited.  Applied Environmental Microbiology Core Research on Stress Response Pathways in Metal-Reducers VIMSS:ESPP.  February 2009, Bethesda, MD.  Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.
        36. Hazen, T. C., H.-Y. Holman, J. Keasling, A. Mukhopadhyay, S. Chhabra, J. T. Geller, M. Singer, D. Joyner, L. Camp, T. Torok, J. Wall, D. Elias, and M. D. Biggin.  Invited.  Protein Complex Analysis Project (PCAP): High Throughput Identification and Structural Characterization of Multi-Protein Complexes during Stress Response in Desulfovibrio vulgaris: Microbiology Subproject. February 2009, Bethesda, MD.  Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.
        37. J. T. Geller, S. E. Borglin, L. E. Camp, R. Chakraborty, J. L. Fortney, M. E. Singer, M. L. Shelby, T. Torok, T. C. Hazen; Application of Custom-Designed Fermentors for Extremophilic Microorganisms, in proceedings for the American Society for Microbiology, 108th General Meeting, Boston, MA, June 1-5, 2008.
        38. D. C. Joyner, C. B. Walker, R. Chakraborty, J. L. Fortney, J. T. Geller, L. E. Camp, A. Zhou, Z. He, M. P. Joachimiak, S. Stolyar, J. Zhou, D. A. Stahl, A. P. Arkin, T. C. Hazen; Characterization of Stress Response in a Sulfate Reducer/Methanogen Coculture, in proceedings for the American Society for Microbiology, 108th General Meeting, Boston, MA, June 1-5, 2008.
        39. M. Dong, H. Liu, M. Choi, T. C. Hazen, J. Geller, M. Singer, L. Camp, S. Allen, S. J. Fisher, S. C. Hall, E. D. Szakal, H. Witkowska, L. Yang, J. Jin, M. D. Biggin; Tagless Protein Complex Identification: A Novel High Throughput Strategy to Purify Protein Complexes and Identify Them by Mass Spectrometry, in proceedings for the American Society for Microbiology, 108th General Meeting, Boston, MA, June 1-5, 2008.
        40. B-G. Han, D. Typke, M. Dong, R. Walton, T. C. Hazen, J. Geller, M. Singer, M. D. Biggin, R. M. Glaeser, Initial Structural Survey of Multi-Protein Complexes of Desulfovibrio vulgaris by Electron Microscopy, in proceedings for the American Society for Microbiology, 108th General Meeting, Boston, MA, June 1-5, 2008.
        41. Dong*, M., M. Daly, H. Liu, S. Allen, E. Szakal, S. C. Hall, S. J. Fisher, L. L. Yang, J. Dearnley, T. C. Hazen, J. T. Geller, M. E. Singer, J. Jin, M. D. Biggin, B. Jap, H. E. Witkowska.  Contributed.  Analysis of an Intact Dissimilatory Sulfite Reductase Protein Complex from Desulfovibrio vulgaris using an Ion Mobility QTOF Analyzer.  June 2008, Denver, CO.  Annual Meeting ASMS Conference on Mass Spectrometry.
        42. Allen*, S., P. J. Walian, E. Szakal, H. Liu, M. Dong, E. Johansen, L. L. Yang, S. C. Hall, S. J. Fisher, T. C. Hazen, J. T. Geller, M. E. Singer, J. Jin, M. D. Biggin, B. Jap, H. E. Witkowska.  Contributed.  Toward the Development of a “Tagless” Method for the Isolation and Identification of Membrane Complexes in Desulfovibrio vulgaris Hildenborough.  June 2008, Denver, CO.  Annual Meeting ASMS Conference on Mass Spectrometry.
        43. Liu*, H., M. Dong, L. L. Yang, S. Allen, P. J. Walian, E. Johansen, S. C. Hall, S. J. Fisher, T. C. Hazen, J. T. Geller, M. E. Singer, J. Jin, M. D. Biggin, B. Jap, H. E. Witkowska.  Contributed.  iTRAQ™ Reagent-Based “Tagless” Strategy of Identification and Purification of Soluble Protein Complexes in Bacteria: Development of High-Throughput Protocols.  June 2008, Denver, CO.  Annual Meeting ASMS Conference on Mass Spectrometry.
        44. Camp, L., S. Chhabra, D. Elias, J. T. Geller, H.-Y. Holman, D. C. Joyner, J. D. Keasling, A. Mukhopadhyay, M. Singer, T. Torok, J. D. Wall, T. C. Hazen, S. Allen, G. Butland, M. Choi, M. Dong, S. C. Hall, B. K. Jap, J. Jin, S. J. Fisher , H. Liu, E. Szakal, P. J. Walian, H. E. Witkowska, L. Yang, M. D. Biggin*, P. Arbelaez, M. Auer, D. Ball, F. Garczarek, R. M. Glaeser, D. Jorgens, J. Malik, E. Nogales , H. Palsdottir, J. P. Remis, D. Typke, K. H. Downing, S. S. Andrews, A. P. Arkin, S. E. Brenner, Y. W. Huang, K. Keller, R. Santos, M. Shatsky, and J.-M. Chandonia.  Invited.  Protein Complex Analysis Project (PCAP): Project overview.  February 2008, North Bethesda, MD.  Genomics: GTL Awardee Workshop VI.
        45. Hazen*, T. C., H.-Y. Holman, J. D. Keasling, A. Mukhopadhyay, S. Chhabra, J. T. Geller, M. Singer, D. C. Joyner,  L. Camp, T. Torok, J. D. Wall, D. Elias, and M. D. Biggin.  Invited.  Protein Complex Analysis Project (PCAP): High Throughput Identification and Structural Characterization of Multi-Protein Complexes During Stress Response in Desulfovibrio vulgaris:Microbiology Subproject.  February 2008, North Bethesda, MD.  Genomics: GTL Awardee Workshop VI.
        46. Hazen, T. C., C. Abulencia, G. Anderson, S. Borglin, E. Brodie, S. v. Dien, M. Fields, J. Fortney, J. Geller, E. Hendrickson, H.-Y. Holman, J. Leigh, T. Lie, R. Phan, J. Jacobsen, D. Joyner, R. Chakraborty, M. Keller, A. Mukhopadhyay, C. Schadt, D. Stahl, S. Stolyar, C. Walker, J. D. Wall, E. Wozei, Z. Yang, H.-c. Yen, G. Zane, and J. Zhou.  Invited.  Applied Environmental Microbiology Core Research on Stress Response Pathways in Metal-Reducers VIMSS:ESPP.  February 2008, North Bethesda, MD.  Genomics: GTL Awardee Workshop VI.
        47. Arkin, A. P., T. C. Hazen, C. Abulencia, E. J. Alm, G. Anderson, M. Auer, E. Baidoo, K. S. Bender, P. Benke, S. Borglin, E. Brodie, S. Brown, L. Camp, R. Chakraborty, S. Chhabra, G. Chirica, D. Chivian, M. Cipriano, P. S. Dehal, T. DeSantis, E. Drury, I. Dubchak, D. Elias, M. W. Fields, V. O. Y. Fok, J. Fortney, S. Gaucher, J. Geller, M. Hadi, Z. He, C. Hemme, K. Hillesland, H.-Y. Holman, K. H. Huang, Y. W. Huang, C. Hwang, J. Jacobsen, M. P. Joachimiak, D. Joyner, J. Keasling, K. Keller, M. Keller, Y. Light, E. Luning, R. Meagher, A. Mukhopadhyay, A. Palumbo, R. Phan, T. Phelps, F. Pingitore, M. Podar, M. N. Price, A. Redding, J. Robertson, R. Sapra, C. Schadt, M. Shirley, A. Shutkin, M. Singer, A. Singh, D. A. Stahl, S. Stolyar, A. Sundararajan, Y. Tang, J. V. Nostrand, S. Villa, C. Walker, J. D. Wall, Z. K. Yang, H.-c. Yen, G. Zane, A. Zhou, and J. Zhou.  Invited.  The Virtual Institute of Microbial Stress and Survival - VIMSS:ESPP Overview.  February 2008, North Bethesda, MD.  Genomics: GTL Awardee Workshop VI.
        48. Dong, M., Haichuan Liu, Simon Allen, Steven C. Hall, Susan J. Fisher, Terry C. Hazen, Jil T. Geller, Mary E. Singer,  Lee Yang, Jian Jin, Mark D. Biggin, H. Ewa Witkowska*.  Contributed.  Methodological Refinements in iTRAQTM Reagent-Based “Tagless” Strategy of Identification and Purification of Soluble Protein Complexes in Bacteria.  August 2007, San Francisco, CA.  8th International Symposium on Mass spectrometry in the Health & Life Sciences: Molecular & Cellular Proteomics
        49. M. E. Singer, J. T. Geller, R. Chakraborty, Y. Katsuura, M. D. Biggin, T. C. Hazen; Reproducible, High Quality Desulfovibrio vulgaris Hildenborough Biomass Production Using Anaerobic Fermentors in Batch and Continuous Flow Mode, in proceedings for the American Society for Microbiology,107th General Meeting Toronto, Canada May 21-25, 2007.
        50. P. J. Walian, M. Dong, S. J. Fisher, J. T. Geller, S. C. Hall, T. C. Hazen, D. C. Joyner, M. E. Singer, H. E. Witkowska, M. D. Biggin, B. K. Jap; Isolation and Identification of Membrane Protein Complexes in Desulfovibrio vulgaris Hildenborough, in proceedings for the American Society for Microbiology,107th General Meeting Toronto, Canada May 21-25, 2007.
        51. M. D. Biggin, M. Dong, G. Butland, J. T. Geller, S. C. Hall, T. C. Hazen, B. K. Jap, J. Jin, S. J. Fisher, M. Singer, P. Walian, H. E. Witkowska, L. Yang; High Throughput Purification and Identification of Water Soluble Protein Complexes in Desulfovibrio vulgaris, in proceedings for the American Society for Microbiology,107th General Meeting Toronto, Canada May 21-25, 2007.
        52. A. Mukhopadhyay, A. M. Redding, A. P. Arkin, S, E. Borglin, P. S. Dehal, R. Chakraborty, J. T. Geller, B. Giles.T. C. Hazen, Q. He, M. Joachimiak, D. C. Joyner, J. D. Wall ,Z. Koo Yang, J. Zhou, J. D. Keasling, Comparison of Desulfovibrio vulgaris Hildenborough Response o Microaerobic and Aerobic Exposure, in proceedings for the American Society for Microbiology,107th General Meeting Toronto, Canada May 21-25, 2007.
        53. Geller, J. T., M. E. Singer and T. C. Hazen, Bioreactors for ESPP Biomass Production, poster presented at the Environmental Stress Pathways Project (ESPP) Annual Retreat, Chalimade, Santa Cruz, CA, July 7-9, 2006, http://vimss.lbl.gov/publicfiles/Geller_Poster.pdf
        54. Geller, J. T., T. C. Hazen, R. Huang, D. Joyner, S. E. Borglin, Characterization of Desulfovibrio vulgaris Grown in Extremophile Turbidostat Reactors, in proceedings for the American Society for Microbiology,105th General Meeting Atlanta, GA June 5-9, 2005
        55. Ajo-Franklin, J. B., J. T. Geller, J. Urban and J. M. Harris, Using Spatially Integrated Crosswell Geophysics for Environmental Site Assessment, Eos Trans. AGU, NS23A-09, 2004
        56. Geller, J. T. and J.B. Ajo-Franklin, Comparison of Laboratory Data and Theoretical Predications of P-wave Transmission Through NAPL/Water Mixtures in Unconsolidated Porous Media, Eos. Trans. AGU, 84(46), Fall Meet. Suppl., Abstract #7645, H22C-0948, 2003.
        57. Geller, J.T., J.B. Ajo-Franklin, and E.L. Majer, Effect of immiscible liquid contaminants on P-wave transmission through natural aquifer samples. In Proceedings of the 2003 Symposium on the Application of Geophysics to Engineering and Environmental Problems (SAGEEP), Environmental and Engineering Geophysical Society (EEGS), San Antonio, Texas, pp. 1059–1077, April 6–10, 2003. Berkeley Lab Report LBNL-52131, Berkeley, California, 2003.
        58. Ajo-Franklin, J.B., J.T. Geller, E.L. Majer, J.E. Peterson, K.H. Williams, and J.M. Harris, Preliminary characterization of a NAPL-contaminated site using borehole geophysical techniques. In: 2003 SAGEEP Proceedings. EEGS, pp. 202–220, San Antonio, Texas, April 6–10, 2003.
        59. Geller, J. T., J. E. Peterson, K. H. Williams, J. B. Ajo-Franklin, and E. L. Majer, First Field Test of NAPL Detection with High Resolution Borehole Seismic Imaging, LBNL Report No. LBNL-50689 Abs., extended abstract for proceedings of Spectrum 2002, 9th Biennial International Conference on Nuclear and Hazardous Waste Management,  August 4 - 8, 2002, Reno, Nevada, USA.
        60. Su, G., M. I. Dragila, J. T. Geller, K. Pruess, J. R. Hunt, Characteristics of Fluid Flow in Unsaturated Fractures - Experimental Results for a Single-Fracture Analog, Eos, Transactions, American Geophysical Union, Vol. 80, 1999.
        61. Su, G., J. Geller, K. Pruess, and J. Hunt, Laboratory experiments on solute transport in unsaturated fractures, in Proceedings of Dynamics of Fluids in Fractured Rock: Concept and Recent Advances, February 1999.
        62. Geller, J. T., S. E. Borglin, B. A. Faybishenko, Experimental Study and Evaluation of Dripping Water in Fracture Models, Abstract, Eos, Transactions, American Geophysical Union, Vol. 79, No. 45, p. F383, November 10, 1998.
        63. Su, G., J. T. Geller, K. Pruess, J. Hunt, M. Dragila, Features of preferential flow paths in heterogeneous, unsaturated fractures, Abstract, Eos, Transactions, American Geophysical Union ,Vol. 79, No. 45, p. F383, November 10, 1998.
        64. Geller, J. T., K. T. Nihei, P. K. Seifert, J. E. Peterson, R. Haught, L. R. Myer, M. B. Kowalsky and S. Glaser, Scale-dependence of high-frequency seismic response in unconsolidated porous media to the presence of NAPL contaminants, 1998 Conference on Hazardous Waste Research, Snow Bird, Utah, May 19-21, 1998.
        65. Kowalsky, M. B., J. T. Geller, P. K. Seifert, K. T. Nihei, R. Gritto, J. E. Peterson, Jr. and L. R. Myer, Acoustic visibility of immiscible liquids in poorly consolidated sand, 1998 International Exposition and 68th Annual Convention, Society of Exploration Geophysics, New Orleans, LA, 1998.
        66. Su, G., J. T. Geller, K. Pruess and F. Wen, Migration and Distribution of NAPLs in a Partially Saturated Rock Fracture, Abstract, Eos, Transactions, American Geophysical Union, Vol. 77, 1996.
        67. Geller, J. T. and P. K. Seifert, Ultrasonic wave propagation through sands saturated with organic liquids and water, Proceedings of the Joint USAF/ARMY contractor/grantee meeting, 14-17 January, 1997, Panama City FL, pp. 83–88.
        68. Hubbard, S., E. Majer, J. Geller, J. Peterson, B. Parsons, Permeability Estimation Using Geophysical Data Abstract, Eos, Transactions, American Geophysical Union, Vol. 77, 1997.
        69. Su, G., J. T. Geller, K. Pruess and F. Wen, Water Infiltration and Intermittent Flow in Rough-Walled Fractures, Abstract, Eos, Transactions, American Geophysical Union, Vol. 76., 1995
        70. Seifert, P. K., J. T. Geller and L. R. Johnson, Effect of P-wave Scattering on Velocity and Attenuation in a Saturated Unconsolidated Sand, Eos, Transactions, American Geophysical Union, Vol. 76., 1995
        71. Geller, J. T. and K. Pruess, On water infiltration in rough-walled fractures, in Proceedings of the Sixth Annual International Conference On High Level Radioactive Waste Management, Las Vegas, Nevada, April 30 - May 5, 1995, pp. 23-25.
        72. Geller, J. T., C. Doughty and J. C. S. Long, Two-phase flow in regionally saturated fractured rock near excavations, in Proceedings of the Sixth Annual International Conference On High Level Radioactive Waste Management, Las Vegas, Nevada, April 30 - May 5, 1995, pp. 209-211.
        73. Geller, J. T. and L. R. Myer, Seismic Imaging of Organic Liquid Contaminants in Unconsolidated Media, Abstract, Eos, Transactions, American Geophysical Union, Vol. 74, No. 43, p 318, 1993.
        74. Majer, E. L. and J. T. Geller, Joint hydrologic, geologic and seismic characterization of soil in the lab and in the field, Abstract, EOS, Transactions, American Geophysical Union, Vol. 73, No. 43, p171, 1992.
        75. Geller, J. T. and J. R. Hunt, Interphase mass transfer from residual organic liquids in water-saturated porous media, Abstract, Eos, Transactions, American Geophysical Union, Vol. 72, No. 17, p. 119, 1991.
        76. Sitar, N., J. R. Hunt and J. T. Geller, Practical aspects of multiphase equilibria in evaluating the degree of contamination, presented at the Conference on Subsurface Contamination by Immiscible Fluids, April 18-20, 1990, Calgary, Alberta, 1990.
        77. Geller, J. T. and J. R. Hunt, Dissolution of non-aqueous phase organic liquids in porous media, Abstract, Eos, Transactions, American Geophysical Union, Vol. 70, No. 43, p. 1092, 1989.
        78. Hunt, J. R., J. T. Geller, N. Sitar and K. S. Udell, Subsurface transport processes for gasoline components, Environmental Engineering, Proceedings of the 1988 Joint CSCE-ASCE National Conference, Vancouver, British Columbia, July 13-15, 1988, pp. 1-8, 1988.
        79. Geller, J. T. and J. R. Hunt, Groundwater contamination by immiscible organic liquids:  experimental results on dissolution kinetics, Abstract, Eos, Transactions, American Geophysical Union, Vol. 69, No. 44, p. 1189, 1988.
        80. Geller, J. T., J. R. Hunt, N. Sitar and K. S. Udell, Organic solvents and petroleum hydrocarbons in the subsurface:  transport and cleanup, Abstract, Eos, Transactions, American Geophysical Union, Vol. 67, No. 44, p. 948, 1986.

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          Special Presentations

          1. Abulencia, C., E. Alm, G. Anderson, A. P. Arkin*, K. Bender, S. Borglin, E. Brodie, R. Chakraborty, S. Chhabra, S. van Dien, I. Dubchak, M. Fields, S. Gaucher, J. Geller, M. Hadi, T. C. Hazen, Q. He, Z. He, H.-Y. Holman, K. Huang, R. Huang, J. Jacobsen, D. Joyner, J. Keasling, K. Keller, M. Keller, A. Mukhopadhyay, R. Phan, M. Price, J. A. Ringbauer, Jr., A. Singh, D. Stahl, S. Stolyar, J. Sun, D. Thompson, C. Walker, J. Wall, J. Wei, D. Wolf, D. Wyborski, H.-C. Yen, G. Zane, J. Zhou, and B. Zuniga.  Invited.  The Virtual Institute of Microbial Stress and Survival (VIMSS): Deduction of Stress Response Pathways in Metal/Radionuclide Reducing Microbes.  February 2006, Washington, DC.  DOE Genomics:GTL Annual Workshop.
          2. Hazen*, T. C., C. Abulencia, G. L. Anderson, S. E. Borglin, E. Brodie, S. van Dien, M. Fields, J. Geller, H.-Y. Holman, R. Huang, R. Phan, E. Wozei, J. Jacobsen, D. Joyner, R. Chakraborty, M. Keller, A. Mukhopadhyay, D. Stahl, S. Stolyar, J. D. Wall, D. Wyborski, H.-C. Yen, G. Zane, J. Zhou, E. Hendrickson, T. Lie, J. Leigh, and C. Walker.  Invited.  VIMSS Applied Environmental Microbiology Core Research on Stress Response Pathways in Metal-Reducers.  February 2006, Washington, DC.  DOE Genomics:GTL Annual Workshop.
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