Earth Sciences Division (ESD) Department of Energy (DOE) Lawrence Berkeley National Laboratory (LBNL)

Jinsong Chen's Publications

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Papers in Refereed Journals

  • Chen, J., and M. E. Glinsky (in press), Stochastic inversion of seismic PP and PS data for reservoir parameter estimation, Geophysics.
  • Wainwright, H. M., J. Chen, D. S. Sassen, and S. S. Hubbard (2014), Bayesian hierachical approach and geophysical data sets for estimation of reactive facies over plume scales, Water Resources Research, Vol. 50, 4564-4584, doi:10.1002/2013WR013842. (pdf)
  • Chen, J., S. S. Hubbard, and K.Williams (2013), Data-driven approach to identify field-scale biogeochemical transitions using geochemical and geophysical data and hidden Markov models: Development and application at a uranium contaminated aquifer, Water Resources Research, Vol. 49, 1-13, doi:10.1002/wrcr.20524. (pdf)
  • Sassen, D. S., S. S. Hubbard, S. A. Bea, J. Chen, N. Spycher, and M. E. Denham (2012), Reactive facies: An approach for parameterizing field-scale reactive transport models using geophysical methods, Water Resources Research, Vol., 48, W10526, doi: 10.1029/2011WR011047.(pdf)
  • Li, M., D. Yang, J. Chen, and S. Hubbard (2012), Calibration of a distributed flood forecasting model with input uncertainty using a Bayesian framework, Water Resources Research, Vol. 48, W08510, doi: 10.1029/2010WR010062. (pdf)
  • Chen, J., M. Hoversten, K. Key, N. Gregg, and W. Cumming (2012), Stochastic inversion of magnetotelluric data using sharp boundary parameterization and applications to a geothermal site, Geophysics, Vol. 77, No. 4, E265-E279, doi: 10.1190/GEO2011-0430.1. (pdf)
  • Chen, J., S. Hubbard, K. Williams, A. Flores-Orozco, and A. Kemna (2012), Estimating the spatiotemporal distribution of geochemical parameters associated with biostimulation using spectral induced polarization data and hierarchical Bayesian models, Water Resources Research, Vol. 48, W05555, doi: 10.1029/2011WR010992. (pdf)
  • Chen, J., and M. Hoversten (2012), Joint inversion of marine seismic AVA and CSEM data using statistical rock-physics models and Markov random fields, Geophysics, Vol. 77, R65-R80, doi:10.1190/GEO2011-0219.1. (pdf)
  • Brown, V., M. Hoversten, K. Key, and J. Chen (2012), Resolution of reservoir scale electrical anisotropy from marine CSEM data, Geophysics, Vol. 77, E147-E158, doi:10.1190/GEO2011-0159.1. (pdf)
  • Chen, J., S. Hubbard, D. Gaines, V. Korneev, G. Baker, and D. Watson (2010), Stochastic estimation of aquifer geometry using seismic refraction data with borehole depth constraints, Water Resources Research, Vol. 46, W 11539, doi:10.1029/2009WR008715. (pdf)
  • Chen, J., S. Hubbard, K. Williams, S. Pride, L. Li, C. Steefel, and L. Slater (2009), A state-space Bayesian framework for estimating biogeochemical transformations using time-lapse geophysical data, Water Resources Research, Vol. 45, W08420, doi: 10.1029/2008WR007698. (pdf)
  • Chen, J., and T. Dickens (2009), Effects of uncertainty in rock-physics models on reservoir parameter estimation using seismic amplitude variation with angle and controlled-source electromagnetics data, Geophysical Prospecting, Vol. 57, No. 1, P. 61-74. (pdf)
  • McHale, C. M., L. Zhang, Q. Lan, G. Li, A. E. Hubbard, M. S. Forrest, R. Vermeulen, J. Chen, M. Shen, S. M. Rappaport, S. Yin, M. T. Smith, and N. Rothman (2009), Changes in the peripheral blood transcriptome associated with occupational benzene exposure identified by cross-comparison on two microarray platforms, Genomics, 93(4), P. 343-349. (pdf)
  • Chen, J., A. Kemna, and S. Hubbard (2008), A comparison between Gauss-Newton and Markov chain Monte Carlo based methods for inverting spectral induced polarization data for Cole-Cole parameters, Geophysics., Vol. 73, No. 6. (pdf)
  • Faybishenko, B., T. Hazen, P. Long, E. Brodie, M. Conrad, S. Hubbard, J. Christensen, D. Joyner, S. Borglin, R. Chakraborty, K. Williams, J. Peterson, J. Chen, S. Brown, T. Tokunaga, J. Wan, M. Firestone, D. Newcommer, C. Resch, K. Cantrell, A. Willett, and S. Koenigsberg (2008), In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound, Environmental Science & Technology, Vol. 42, P. 8478-8485. (pdf)
  • Hubbard, S., K. Williams, M. Conrad, B. Faybishenko, J. Peterson, J. Chen, P. Long, and T. Hazen (2008), Geophysical monitoring of hydrological and biogeochemical transformations associated with Cr(VI) bioremediation, Environmental Science & Technology, Vol. 42, P. 3757-3765. (pdf)
  • Chen, J., M. van der Laan, M. Smith, and A. Hubbard (2007), A comparison of methods to control Type I errors in microarray studies, Statistical Applications in Genetics and Molecular Biology, Vol. 6, Iss. 1, Article 28. (pdf)
  • Chen, J., M. Hoversten, D. Vasco, Y. Rubin, and Z. Hou (2007), A Bayesian model for gas saturation estimation using marine seismic AVA and CSEM data, Geophysics, Vol. 72, No. 2, P. WA85-WA95. (pdf)
  • Hou, Z., Y. Rubin, M. Hoversten, D. Vasco, and J. Chen (2006), Reservoir parameter identification using minimum relative entropy based Bayesian inversion of seismic AVA and marine CSEM data, Geophysics, Vol. 71, No. 6, P. O77-O88. (pdf)
  • Chen, J., S. Hubbard, J. Peterson, K. Williams, M. Fienen, P. Jardine, and D. Watson (2006), Development of a joint hydrogeophysical inversion approach and application to a contaminated fractured aquifer, Water Resources Research, 42(6). (pdf)
  • Rubin, Y., M. Hoversten, Z. Hou, and J. Chen (2006), Risk reduction in gas reservoir exploration using joint seismic-EM inversion, Gas TIPS.
  • Kowalsky, M., J. Chen, and S. Hubbard (2006), Joint inversion of geophysical and hydrological data for improved subsurface characterization, The leading Edge, 25, 730. (pdf)
  • Hoversten, M., F. Cassassuce, E. Gasperikova, G. Newman, J. Chen, Y. Rubin, Z. Hou, and D. Vasco (2006), Direct reservoir parameter estimation using joint inversion of marine seismic AVA and CSEM data, Geophysics, Vol. 71, No. 3, P.C1-C13. (pdf)
  • Scheibe, T. D., Y. Fang, C. J. Murray, E. E. Roden, J. Chen, Y.-J. Chien, S. C. Brooks, and S. S. Hubbard (2006), Transport and biogeochemical reaction of metals in a physically and chemically heterogeneous aquifer, Geosphere, 2(4). (pdf)
  • Chen, J., S. Hubbard, Y. Rubin, C. Murray, E. Roden, and E. Majer (2004), Geochemical characterization using geophysical data and Markov chain Monte Carlo methods: a case study at the South Oyster Bacterial Transport Site in Virginia, Water Resources Research, 40(12). (pdf)
  • Chen, J., and Y. Rubin (2003), An effective Bayesian model for lithofacies estimation using geophysical data, Water Resources Research, 39(5). (pdf)
  • Chen, J., S. Hubbard, and Y. Rubin (2001), Estimating the hydraulic conductivity at the South Oyster Site from geophysical tomographic data using Bayesian techniques based on the normal linear regression model, Water Resources Research,37(6). (pdf)
  • Hubbard, S., J. Chen, J. Peterson, E. Majer, K. Williams, D. Swift, B. Mailloux, and Y. Rubin (2001), Hydrogeological characterization of the South Oyster Bacterial Transport Site using geophysical data, Water Resources Research, 37(10). (pdf)
  • DeFlaun, M., ..., J. Chen, and Others (2001), Breakthroughs in bacterial transport, EOS Transactions, Article, 82(38). (pdf)
  • Ezzedine, S., Y. Rubin, and J. Chen (1999), Bayesian method for hydrogeological site characterization using borehole and geophysical survey data: theory and application to the Lawrence Livemore National Laboratory Superfund Site, Water Resources Research, 35(9). ( pdf)
  • Chen, J., and X. Lin (1994), Self-optimization of water resources systems simulation, Journal of Tsinghua University (Science & Technology), 34(2).
  • Chen, J., and X. Lin (1993), Self-optimization problems in large-scale water resources systems, Hydro-energy Technique and Economy, 49(2).

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Papers in Conference Proceedings and Books

  • Chen, J., and M. E. Glinsky (2013), Stochastic inversion of seismic PP and PS data for reservoir parameter estimation, SEG Technical Program Expanded Abstracts 2013: 1669-1673.
  • Chen, J., M. Hoversten, and A. Sekar (2013), A sequential Bayesian approach for inverting elastic seismic data in the frequency-ray parameter domain, SEG Technical Program Expanded Abstracts 2013: 3267-3272.
  • Chen, J., M. Hoversten, K. Key, and G. Nordquist (2010), Stochastic inversion of 2D magnetotelluric data using sharp boundary parameterization, SEG Expanded Abstracts 29, 609-613. (pdf)
  • Chen, J., and M. Hoversten (2009), Joint inversion of marine seismic AVA and CSEM data using statistical rock-physics models and Markov random fields, SEG Expanded Abstracts 28, 714-718. (pdf)
  • Chen, J., and T. Dickens (2007), Effects of uncertainty in rock-physics models on reservoir parameter estimation using marine seismic AVA and CSEM data, SEG Expanded Abstracts 26, 457-461. (pdf)
  • Linde, N., J. Chen, M. Kowalsky, and S. Hubbard (2006), Hydrogeophysical parameter estimation approaches for field scale characterization, In Applied Hydrogeophysics, edited by H. Vereecken et al., Chapter 2, 9-44, Springer. (pdf)
  • Chen, J., and M. Hoversten (2005), Estimating reservoir parameters from seismic and electromagnetic data using stochastic rock physics models and Markov chain Monte Carlo methods, SEG Expanded Abstracts, 24, 1437. (pdf)
  • Hoversten, M., J. Chen, E. Gasperikova, and G. Newman (2005), Integration of marine CSEM and seismic AVA data for reservoir parameter estimation, SEG Expanded Abstracts, 24, 579. (pdf)
  • Hou, Z., Y. Rubin, M. Hoversten, J. Chen, and D. Vasco (2005), MRE-based Bayesian inversion of seismic and EM data for identification of reservoir parameters, SEG Expanded Abstracts, 24, 635. (pdf)
  • Chen, J., M. Hoversten, D. Vasco, Y. Rubin, and Z. Hou (2004), Joint stochastic inversion of seismic AVO and EM data for gas saturation estimation using a sampling-based stochastic model, SEG Expanded Abstracts, 23, 236. (pdf)
  • Chen, J., S. Hubbard, and J. Peterson (2004), A comparison between hydrogeophysical characterization approaches applied to granular porous and fractured media, The Proceedings of International Symposium of Dynamics of Fluids in Fractured Rock, Lawrence Berkeley National Laboratory, Berkeley, california, February 10-14. (pdf)
  • Chen, J., and M. Hoversten (2003), Joint stochastic inversion of geophysical data for reservoir parameter estimation, SEG Expanded Abstracts, 22, 726. (pdf)
  • Chen, J. and Y. Rubin (2002), Characterizing lithofacies from borehole and cross-well geophysical data using Bayesian methods coupled with fuzzy neural networks, The Proceedings of International Groundwater Symposium, Lawrence Berkeley National Laboratory, Berkeley, California, March 25-28. (pdf)
  • Chen, J., and X. Lin (1992), Sensitivity analysis of weight vectors in multiple criteria decisions, 7th SESC (System Engineering Society of China) Annual Conference Papers (in Chinese), China.
  • Chen, J., and X. Lin (1990), Multi-objective decision theories and methods in large-scale hydraulic engineering, Collection of System Engineering Papers on Hydraulic Engineering (in Chinese), China.

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Abstracts

  • Chen, J., S. S. Hubbard, C. M. Mok, R. M. Suribhatla, and D. Kaback (2012), HydroImage: A new software for easy integration of hydrogeophysical and biogeochemical data for subsurface characterization, Abstract presented at the Eighth International Conference on Remediation of Chlorinated and Recalcitrant Compounds, Monterey, California, 21-24 May.
  • Chen, J., H. Wu, L. Li, K. H. Williams, M. B. Kowalsky, C. Steefel, and S. S. Hubbard (2012), Field-scale estimation and simulation of biogeochemical heterogeneity, Abstract presented at the DOE Subsurface Biogeochemical Research (SBR) Annual Meeting, Washington, DC, 30 Apr - 2 May.
  • Chen, J., S. C. Pullman, S. S. Hubbard, and J. E. Peterson (2011), An open-source software for stochastic inversion of spectral induced polarization data for Cole-Cole parameters, Abstract presented at the Second International Workshop on Induced Polarization in Near-surface Geophysics, Denver, Colorado, 31 Oct - 2 Nov.
  • Chen, J., S. S. Hubbard, and K. H. Williams (2011), Identifying field-scale bioremediation status from geochemical and geophysical data using dynamic linear models with switching: development and application at a uranium contaminated aquifer, Abstract B23D-05 presented at 2011 Fall Meeting, AGU, San Francisco, California, 5-9 Dec.
  • Gong, R., J. Chen, G. M. Hoversten, and J. Luo (2011), Model reduction via principal component analysis and Markov chain Monte Carlo (MCMC) methods, Abstract H43D-1247 presented at 2011 Fall Meeting, AGU, San Francisco, California, 5-9 Dec.
  • Wainwright, H. M., D. S. Sassen, J. Chen, and S. S. Hubbard (2011), Multiscale hydrogeophysical data assimilation for plume-scale subsurface characterization, Abstract H52C-06 presented at 2011 Fall Meeting, AGU, San Francisco, California, 5-9 Dec.
  • Suribhatla, R. M., C. M. Mok, D. Kaback, J. Chen, and S. S. Hubbard (2011), HydroImage: A new sofware for hydrogeophysical and biogeophysical data integration, Abstract H43D-1249 presented at 2011 Fall Meeting, AGU, San Francisco, California, 5-9 Dec.
  • Chen, J., S. S. Hubbard, K. H. Williams, C. Tuglus, A. Flores-Orozco, and A. Kemna (2010), A hierarchical Bayesian model for estimating remediation-induced biogeochemical transformations using spectral induced polarization data: development and application to the contaminated DOE Rifle (CO) site, Abstract H11E-0847 presented at 2010 Fall Meeting, AGU, San Francisco, California, 13-17 Dec.
  • Chen, J., and G. M. Hoversten (2010), Joint stochastic inversion of seismic amplitude versus angles and controlled sources electromagnetic data for gas saturation estimation, Abstract NS43A-03 (Invited) presented at 2010 Fall Meeting, AGU, San Francisco, California, 13-17 Dec.
  • Chen, J., S. Pullman, S. S. Hubbard, and J. E. Peterson (2009), A web interface for software of stochastic inversion of spectral induced polarization data, Eos Trans. AGU, 90(52), Fall Meet. Suppl., Abstract NS31B-1168.
  • Li, M., D. Yang, J. Chen, and S. S. Hubbard (2009), A sampling-based Bayesian model for calibration of a distributed flood forecasting model with input uncertainty, Eos Trans. AGU, 90(52), Fall Meet. Suppl., Abstract H41F-0950.
  • Tuglus, C., J. Chen, and S. S. Hubbard (2009), Hierarchical Bayesian model for estimating the spatiotemporal distribution of geochemical processes associated with in-situ remediation using geophysical data sets, Eos Trans. AGU, 90(52), Fall Meet. Suppl., Abstract H53B-0918.
  • Hubbard, S. S., Y. Wu, J. Chen, J. B. Ajo-Franklin, L. Li, C. Tuglis, and K. H. Williams (2009), Assessing feedbacks between remediation-induced biogeochemical transformations and flow characteristics using multiscale geophysical approaches, 90(52), Fall Meet. Suppl., Abstract H53J-02 (Invited).
  • Chen, J., T. M. Daley, and C. Torres-Verdin (2008), Inverse modeling of full-waveform, single-well geophysical data using a Bayesian model and Markov chain Monte Carlo methods, Abstract presented at 2008 Joint Statistical Meetings (JSM), Denver, Colorado, 3-7 Aug.
  • Chen, J., S. S. Hubbard, V. Korneev, D. Gaines, G. S. Baker, and D. Watson (2008), Stochastic inversion of seismic refraction data with borehole depth constraints for watershed-scale characterization of aquifer geometry, Eos Trans. AGU, 89(53), Fall Meet. Suppl., H44C-06.
  • Chen, J., S. S. Hubbard, G. M. Hoversten, and A. Hubbard (2007), A Bayesian model for inversion of geophysical seismic and electromagnetic data, Abstract presented at 2007 Joint Statistical Meetings (JSM),  Salt Lake City, Utah, 29 Jul - 2 Aug.
  • Chen, J., A. Kemna, and S. S. Hubbard (2007), A comparison between deterministic and stochastic methods for inverting spectral induced polarization data, Eos Trans. AGU, 88(52), Fall Meet. Suppl., Abstract NS13A-01.
  • Kowalsky, M. B., S. S. Hubbard, J. Chen, J. E. Peterson, and G. P. Flach (2007), Multiscale hydrogeophysical data integration for parameterization of transport models at Savannah River Site, Eos Trans. AGU, 88(52), Fall Meet. Suppl., Abstract H14C-01 (Invited).
  • Hubbard, S. S., A. Englert, M. B. Kowalsky, J. Chen, J. E. Peterson, and K. H. Williams (2007), Exploring hydrological and biogeochemical processes associated with remedial treatments using geophysical methods, Eos Trans. AGU, 88(52), Fall Meet. Suppl., Abstract NS13A-08 (Invited).
  • Chen, J., S. Hubbard, K. Williams, A. Kemna, L. Slate, and S. Pride (2006), A stochastic framework for geochemical parameter estimation using geophysical methods: development and application, Eos Trans. AGU, 87(52), Fall Meet. Suppl., Abstract H44B-04.
  • Hubbard, S., K. Williams, T. Scheibe, J. Peterson, J. Chen, S. Mukhopadhyay, E. Sonnenthal, and C. Steefel (2006), Improved understanding of natural system processes through coupling of geophysical characterization and numerical modeling approaches, Eos Trans. AGU, 87(52),Fall Meet. Suppl., Abstract H41G-01 (Invited).
  • Mok, C. W., J. Chen, S. Hubbard, D. Kaback, and C. Lebish (2006), HydroImage-A user friendly hydrogeophysical characterization software package, Eos Trans. AGU, 87(52), Fall Meet. Suppl., Abstract NS41B-1143.
  • Hubbard, S., K. Williams, A. Kemna, J. Chen, and J. Peterson (2006), Use of geophysical methods to investigate, guide, and access contaminant remediation approaches, GSA Abstracts, 38(7), Philadelphia, PA, October 22-25.
  • Hubbard, S., J. Chen, Y. Fang, K. Williams, S. Mukhopadhyay, E. Sonnenthal, K. McFarlane, N. Linde and T. Scheibe (2006), Improved parameterization of hydrological models and reduction of geophysical monitoring data ambiguity through joint use of geophysical and numerical modeling methods, CWMR, Copenhagen, June 19-23.
  • Chen, J., M. Hoversten, D. Vasco, Z. Hou, and Y. Rubin (2005), Markov chain Monte Carlo based approaches for inverse problems, Eos Trans. AGU, 86(52), Fall Meet. Suppl., Abstract H21G-07.
  • Hubbard, S., J. Peterson, J. Chen, K. Williams, M. Conrad, B. Fabishenko, P. Long, A. Willett, and T. Hazen (2005), Geophysical monitoring of Cr(VI) bioreduction at the Hanford 100H Site, Eos Trans. AGU, 86(52), Fall Meet. Suppl., Abstract H44C-03.
  • Hoversten, M., E. Gasperikova, J. Chen, and G. Newman (2005), Joint inversion of marine seismic and CSEM data for fluid saturation prediction, Eos Trans. AGU, 86(52), Fall Meet. Suppl., Abstract GP41B-0882.
  • Hou, Z., J. Chen, and Y. Rubin (2005), On application of ground-penetrating radar tomography in shallow subsurface hydrological parameter estimation, Eos Trans. AGU, 86(52), Fall Meet. Suppl., Abstract H43J-01.
  • Hubbard, S., J. Chen, K. Williams, J. Peterson, and Y. Rubin (2005), Environmental and agricultural applications of GPR, International Workshop on Ground Penetrating Radar Invited Keynote, Delft, Netherlands, May 2-4.
  • Chen, J., S. Hubbard, M. Fienen, T. Mehlhorn, and D. Watson (2003), Estimating hydrogeological using high-resolution geophysical data and Markov chain Monte Carlo methods, Eos Trans. AGU, 84(46), Fall Meet. Suppl., Abstract H21F-04.
  • Rubin, Y., J. Chen, Z. Hou, M. Kowalsky, and S. Hubbard (2003), Bayes, Zadeh, and Shannon, and the development of a structured approach to the hydrogeological data fusion problem, EGS-AGU-EUG Joint Invited Assembly, Nice, France, Geophysical Research Abstract 5, 02403.
  • Chen, J., S. Hubbard, Y. Rubin, C. Murray, E. Roden, and E. Majer (2002), Geochemical characterization using geophysical data and Markov chain Monte Carlo methods, Eos Trans. AGU, 83(47), Fall Meet. Suppl., Abstract H52F-10.
  • Rubin, Y., J. Chen, S. Hubbard, M. Kowalsky, and A. Woodbury (2002), A structured approach to Bayesian data fusion, Eos Trans. AGU, 83(47), Fall Meet. Suppl., Abstract H52F-05, Invited.
  • Hubbard, S., K. Williams, J. Chen, Y. Rubin, and E. Majer (2001), Characterization and monitoring of the Oyster Bacterial Transport Site using geophysical data, GSA Abstracts, Boston, Nov. 1-10.
  • Hubbard, S., J. Chen, B. Mailloux, E. Majer, and Y. Rubin (2000), Heterogeneity and bacterial transport at the Oyster, VA Site, Eos Trans. AGU, 81(48), Fall Meet. Suppl., Abstract B51C-01.
  • Swift, D., M. Green, J. Chen, S. Hubbard, E. Majer, and M. Christopher (2000), Deriving hydrofacies from lithofacies at the Oyster Virginia experimental site, Eos Trans. AGU, 81(48), Fall Meet. Suppl., Abstract B52A-04.
  • Christopher, M., E. Roden, K. Overstreet, Y. Chien, J. Chen, and S. Hubbard (2000), Spatial heterogeneity of microbial iron reduction potential at the South Oyster Focus Area, Virginia, Eos Trans. AGU, 81(48), Fall Meet. Suppl., Abstract B51C-11.
  • Chen, J., S. Hubbard, and Y. Rubin (1999), Estimating hydraulic conductivity at the Oyster (VA) Site from hydrological and geophysical data by using Bayesian methods based on a normal linear model, Eos Trans. AGU, 80(48), Fall Meet. Suppl., Abstract GP31B-10.
  • Green, M, D. Swift, J. Chen, S. Hubbard, E. Majer, and C. Murray (1999), Heterogeneity at the Narrow Channel Site, Oyster, VA: a statistical approach to assess the sedimentary facies prior to correlations with permeability and geophysical imaging, EOS, Washington D.C.

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