Kristen M. DeAngelis's Publications

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Publications in Press

  1. Sagaram, US, KM DeAngelis, P Trivedi, GL.Andersen, S Lu, N Wang. 2009. Bacterial diversity analysis of citrus leaves from HLB pathogen infected citrus groves using PhyloChips and 16S rDNA clone library sequencing. Applied and Environmental Microbiology, 75(6): 1566-1574.
  2. DeAngelis KM, EL Brodie, TZ DeSantis, GL Andersen, Lindow SE and Firestone MK. 2009. Selective, progressive response of soil microbial community to wild oat roots. ISME Journal (3):168-178.
  3. Templer P, Pett-Ridge J, DeAngelis KM, Firestone MK, Silver W. 2008. Plant and microbial controls on nitrogen retention and loss in Puerto Rican forest soils. Ecology, 89(11): 3030-3040.
  4. DeAngelis KM, Lindow SE and Firestone MK. 2008. Bacterial quorum sensing and nitrogen cycling in rhizosphere soil. FEMS Microbiology Ecology, v66:197-207.
  5. Hawkes CV, DeAngelis KM, and Firestone MK.  2007. Root Interactions with Microbial Communities and Processes. In The Rhizosphere: an Ecological Perspective. Julie L. Whitbeck and Zoe Cardon, eds. Academic Press, Inc., San Diego CA.
  6. DeAngelis KM, Firestone MK and Lindow SE. 2007. Sensitive whole-cell biosensor suitable for detecting a variety of N-acyl homoserine lactones in intact rhizosphere microbial communities.  Applied and Environmental Microbiology, v73(11): 3724-3727.
  7. DeAngelis KM, Ji P, Firestone MK, Lindow SE. 2005. Construction of a Novel Bacterial Sensor for the Detection of Nitrate Availability in the Rhizosphere. Applied and Environmental Microbiology, vol  71 (12): 8537-8547
  8. Liu JY, Smith CL, DeRyckere D, DeAngelis K, Martin GS, Berger JM. 2000. Structure and function of Cdc6/Cdc18: Implications for origin recognition and checkpoint control. Molecular Cell, v 6(3): 637-648.
  9. Nichols MN, DeAngelis K, Keck J, Berger JM. 1999. Structure and function of an Archaeal Topoisomerase VI subunit with homology to the meiotic recombination factor Spo11. The EMBO Journal, v. 18, n.21 6177-6188.
  10. Rifai N, Iannotti E, DeAngelis K, Law T. 1998. Analytical and clinical performance of a homogeneous enzymatic LDL-Cholesterol assay compared with the Ultracentrifugation-Dextran Sulfate-Mg++ method. ClinicalChemistry 44:6, 1242-1250.
  11. Law T, Arslanian S, Iannotti E, DeAngelis K, Rifai N. 1998. Departments of Laboratory Medicine and Pathology, Children’s Hospital and Harvard Medical School, Boston MA. Analytical Performance of the Roche Direct HDL-Cholesterol Assay compared with the Ultracentrifugation-Dextran Sulfate-Mg++Method. Clinical Chemistry Suppl 44:6, A77.

 

Publications in Preparation

  1. DeAngelis KM, W Silver, AW Thompson, MK Firestone. Specific microbial populations thrive under fluctuating redox conditions in tropical soils.
  2. DeAngelis KM, JL Fortney, TC Hazen. Isolation of novel lignocellulose-degrading organisms from Puerto Rican rainforest soils.
  3. DeAngelis KM, TC Hazen, WL Silver, Below-ground decomposing microbial communities

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Presentations and Posters

  1. DeAngelis, KM, J Fortney, WL Silver, TC Hazen. “Identification and characterization of lignocellulolytic microbes in Puerto Rican tropical forest soils.” Society for Industrial Biology and Biotechnology Annual Meeting, Toronto, Canada July 2009.
  2. DeAngelis, KM, J Fortney, WL Silver, TC Hazen. “Investigation of novel lignocellulolytic organisms and enzymes from wet tropical forest soils in Puerto Rico.” American Society for Microbiology poster, Philadelphia, PA, May 2009.
  3. Knierim*, B., L. Prak, S. Singh, D. Jorgens, M. Zemla, K.M. DeAngelis, A. P. Reddy, J. VanderGheynst, T. C. Hazen, B. M. Holmes, R. Sapra, B. A. Simmons, P. D. Adams, and M. Auer.  Contributed.  Electron Microscopic Imaging at JBEI.  May 2009, San Francisco, CA.  31st Symposium on Biotechnology for Fuels and Chemicals, Society for Industrial Microbiology.
  4. DeAngelis, K. M., W. L. Silver, J. Fortney, and T. C. Hazen.  Invited.  Discovery and Optimization of Lignocellulolytic Bacteria from Puerto Rican Rainforest Soils.  February 2009, Bethesda, MD.  Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009
  5. Knierim*, B., L. Prak, S. Singh, D. Jorgens, M. Zemla, K.M. DeAngelis, A. Reddy, J. VanderGheynst, T. C. Hazen, B. Holmes, R. Sapra, B. Simmons, P. Adams, and M. Auer.  Invited.  Electron Microscopic Imaging a JBEI.  February 2009, Bethesda, MD.  Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.
  6. Hazen, T. C., P. Hugenholtz, S. Singer, J. VanderGheynst, P. M. D’haeseleer, M. P. Thelen, K. M. DeAngelis, A. Reddy, M. Allgaier, J. Fortney, G. Andersen, T. DeSantis, E. Brodie, C. Wu, D. Goodheart, M. Firestone, W. Silver, and B. Simmons.  Invited.  JBEI Microbial Communities Deconstruction Research Activities.  February 2009, Bethesda, MD.  Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.
  7. Allgaier, M., A. Reddy, J. VanderGheynst, A. Copeland, V. Kunin, P. D’haeseleer, K. M. DeAngelis, J. Fortney, D. Chivian, P. S. Dehal, B. Simmons, T. C. Hazen, and P. Hugenholtz.  Invited.  Metagenomic Characterization of Compost and Rain Forest Soil Microbial Communities.  February 2009, Bethesda, MD.  Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.
  8. Waldrop, MP, K Wickland, C Rychel, KM DeAngelis, J Janssen, JW Harden. Is the temperature sensitivity of decomposition affected by the number of active microorganisms in northern frozen soils? AGU Poster, December 2008 San Francisco, CA.
  9. DeAngelis, KM, Silver WS, Thompson AW, Firestone MK. “Specific microbial populations thrive under fluctuating redox conditions in tropical soils.” AGU poster, December 2008 San Francisco, CA.
  10. Silver, Whendee L., Kristen M. DeAngelis, Wendy Yang, and Andrew W. Thompson. “Biogeochemical cycling in the critical zone: From pattern to process and back again.” 2008 Goldschmidt Conference, Vancouver, CA
  11. DeAngelis, KM, Silver WS, Thompson AW, Firestone MK. “Specific microbial populations thrive under fluctuating redox conditions in tropical soils.” American Society for Microbiology poster, Boston MA 2008.
  12. Silver, Whendee L., DeAngelis, Kristen M., Thompson, Andrew W., Firestone, Mary K. “Temporal and spatial dynamics of redox-sensitive biogeochemistry in tropical forests: Implications for C, N, P, and Fe cycling.” Joint Meeting of the 92nd Ecological-Society-of-American/Society-for-Ecological-Restoration, August 05 -10, 2007 San Jose, CA, USA
  13. Oldenburg, CM, MS Torn, KM DeAngelis, JB Ajo-Franklin, RG Amundson, CJ Bernacchi, GM Bond, EL Brodie, M Carerra, JN Christensen, AB Cunningham, B Fouke, TC Hazen, AK Jain, M Kleber, KG Knauss, S Nakagawa, KL O’Hara, WJ Parton, WL Silver, JW Six, WI Stringfellow, TK Tokunaga, T Xu, and D Zilberman. 2008. Biologically Enhanced Carbon Sequestration: Research Needs and Opportunities. Report on the Energy Biosciences Institute Workshop on Biologically Enhanced Carbon Sequestration, October 29, 2007, Berkeley, CA.
  14. DeAngelis KM, Lindow SE and Firestone MK. “The Rhizosphere: Microbial community structure and function as control points for nitrogen cycling.” ESA talk in Organized Oral Session Carbon, Nitrogen and Water fluxes in the Rhizosphere, Aug 2006.
  15. DeAngelis KM, Lindow SE and Firestone MK. “The Rhizosphere: Microbial community structure and function as control points for nitrogen cycling.” ISME poster, Vienna, Austria, Aug 2006.
  16. DeAngelis KM, Firestone MK, and Lindow SE. “Quorum sensing as a control point in rhizosphere nitrogen transformations.” ASM poster, Orlando FL, May 2006.
  17. DeAngelis K, Firestone MK, Lindow SE. Quorum sensing in the rhizosphere: quantitative and qualitative effects on bacterial community. Poster, International Society of Microbial Ecology, Cancun Mexico, Aug 2004
  18. DeAngelis K, Firestone MK. Effects of Soil Microbial Community Composition on Nitrogen Cycling Dynamics in Rhizosphere Soil.  Invited symposium: “Emerging Perspectives on the Feedbacks between Plant and Soil Communities” at Ecological Society of America, Tucson, Arizona, Aug 2002.
  19. DeAngelis K. Quorum sensing in the Rhizosphere: Effects on Nitrogen Mineralization and Plant Nitrogen Availability. UC Berkeley Biogeochemistry Seminar Series Apr 2002.
  20. DeAngelis K, Schwartz E, Firestone MK, Wan J, Tokunaga T, Joyner D, and Hazen T. Microbial Community Composition and Chromium Transport in Clay Sediment.  Poster at UC Berkeley Annual Microbiology Symposium 2001.
  21. DeAngelis K, Nichols MN, Keck J, Berger JM. Structure and function of an Archaeal Topoisomerase VI subunit with homology to the meiotic recombination factor Spo11. Poster presented at UC Berkeley Biochemistry and Molecular Biology Meeting 2000.

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