Earth Sciences Division (ESD) Department of Energy (DOE) Lawrence Berkeley National Laboratory (LBNL)

Maude David's Publications

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Peer-Reviewed Publications

Prestat E *, David MM * , Hultman J, Taş N, Lamendella R, Dvornik J, Mackelprang R, Myrold D, Jumpponen A, Tringe S, Holman E, Mavromatis K, Jansson J. Functional Ontology Assignments for Metagenomes: a Hidden Markov Model (HMM) database with environmental focus. Nucleic Acids Research. In Press. *the first two authors should be regarded as joint First Authors

David MM, Cecillon S, Warne BM, Prestat E, Jansson JK, Vogel TM. 2014. Microbial ecology of chlorinated solvent biodegradation. Environ. Microbiol. DOI: 10.1111/1462-2920.12413

Bravo D, Martin G, David MM, Cailleau G, Verrecchia E, Junier P. 2013. Identification of active oxalotrophic bacteria by Bromodeoxyuridine DNA labeling in a microcosm soil experiments. FEMS Microbiol. Lett. 348:103–111.

Nicora CD, Anderson BJ, Callister SJ, Norbeck AD, Purvine SO, Jansson JK, Mason OU, David MM , Jurelevicius D, Smith RD, Lipton MS. 2013. Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies. Proteomics 13:2776–2785.

Bælum J, Prestat E, David MM, Strobel BW, Jacobsen CS. 2012. Modeling of Phenoxy Acid Herbicide Mineralization and Growth of Microbial Degraders in 15 Soils Monitored by Quantitative Real-Time PCR of the Functional tfdA Gene. Appl. Environ. Microbiol. 78:5305–5312.

Dugat-Bony E, Biderre-Petit C, Jaziri F, David MM, Denonfoux J, Lyon DY, Richard J-Y, Curvers C, Boucher D, Vogel TM, Peyretaillade E, Peyret P. 2012. In situTCE degradation mediated by complex dehalorespiring communities during biostimulation processes. Microbial Biotechnology 5:642–653.

Mackelprang R, Waldrop MP, DeAngelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK. 2011. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 480:368–371.

Demanèche S, Philippot L, David MM, Navarro E, Vogel TM, Simonet P. 2009. Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. Appl. Environ. Microbiol. 75:534–537.

Demanèche S, David MM, Navarro E, Simonet P, Vogel TM. 2009. Evaluation of functional gene enrichment in a soil metagenomic clone library. J. Microbiol. Methods 76:105–107.

David M, Bringel F, Pagni M, Gilmartin N, Boubakri H, Nadalig T, Simonet P, Vogel T, Vuillemier S. 2008. Diversité et évolution des déshalogénases bactériennes : détection bioinformatique et perspectives de recherches (Diversity and evolution of bacterial dehalogenases: bioinformatic detection and research prospects). Les Actes du BRG 7:83–94.

David MM, Sapkota AR, Simonet P, Vogel TM. 2008. A novel and rapid method for synthesizing positive controls and standards for quantitative PCR. J. Microbiol. Methods 73:73–77.

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Book Chapters

Sibel Berger, Maude M. David, Timothy M. Vogel and Pascal Simonet. Chapter 16 : Rôle du transfert horizontal de gènes dans la dégradation biologique des molécules chlorées : exemple de la dégradation biologique du lindane. In: Bertrand J.-C., Caumette P., Lebaron P. & Normand P. Écologie microbienne: microbiologie des milieux naturels et anthropisés (Microbial Ecology : microbiology of natural and anthropic environment). Presses Universitaires de Pau

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Proceedings Publications

Maude M. David, Margaux Mesle, Cédric Malandain, Dorothée Cohen, Benoit Vigier, Philippe Barbier, Ronald Lantzy and Timothy M.Vogel. Paper B-099. Remediation of Chlorinated and Recalcitrant Compounds—2008. Molecular biology-based strategy for site remediation. Proceedings of the Sixth International Conference on Remediation of Chlorinated and Recalcitrant Compounds (Monterey, CA; May 2008). ISBN 1-57477-163-9, published by Battelle, Columbus, OH
Maude M. David, Pascal Simonet and Timothy M. Vogel. DNA Shuffling: a dynamic model for novel gene synthesis. International Journal of Astrobiology. 6 (2007) 59-87

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