Earth Sciences Division (ESD) Department of Energy (DOE) Lawrence Berkeley National Laboratory (LBNL)

Ecology Department Presentations & Media (2011)

July

  • Hazen, T. C.  Invited Symposium.  Can Mother Nature Take a Punch? - Microbes and the BP Oil Spill in the Gulf of Mexico.  July 27, 2011, Ocean Springs, MS.  Grimes Distinguished Lecturer Program, Gulf Coast Research Lab.
  • Hazen, T. C.  Invited Symposium.  A Systems Biology Approach to the Deepwater Horizon Oil Spill – an example of Team Science for ecological disasters..  July 27, 2011, Ocean Springs, MS.  Grimes Distinguished Lecturer Program, Gulf Coast Research Lab.

    Hazen, T. C.  Invited Symposium.  The Gulf Oil Spill.  July 27, 2011, New Orleans, LA.  SIM annual meeting.

    Andersen*, G. L., E. Dubinsky, Y. M. Piceno, L. Tom, K. Sublette, T. Z. DeSantis, T. C. Hazen, and S. E. Borglin.  Invited Symposium.  Response of petroleum-degrading microbial communities at different depths to the Deepwater Horizon oil spill.  July 26, 2011, New Orleans, LA.  SIM annual meeting.

    DeAngelis*, K. M., P. D'Haeseleer, J. Fortney, S. Borglin, W. L. Silver, and T. C. Hazen.  Invited Symposium.  Metagenomics of anaerobic lignocellulolytic feedstock-adapted consortia derived from tropical forest soils.  July 26, 2011, New Orleans, LA.  SIM annual meeting.  July 26, 2011, New Orleans, LA.  SIM annual meeting.

    Sobecky*, P. A., M. Beazley, R. J. Martinez, S. S. Rajan, J. Powell, Y. Piceno, G. L. Andersen, L. Tom, T. C. Hazen, J. D. Nostrand, J. Zhou, and B. Mortazav.  Invited Symposium.  Coastal Alabama Bacterial Community Responses to the Deepwater Horizon Oil Spill.  July 26, 2011, New Orleans, LA.  SIM annual meeting.  July 28, 2011, New Orleans, LA.  SIM annual meeting.

    Hazen, T. C.  Invited Symposium.  Metagenome and single cell sequencing.  July 26, 2011, New Orleans, LA.  SIM annual meeting.

June

  • Hazen, T. C., B. Faybishenko*, H. Beller, E. Brodie, E. Sonnenthal, C. Steefel, J. Larsen, M. Conrad, M. Bell, J. Christensen, S. Brown, D. Joyner, S. Borglin, J. Geller, R. Chakraborty, P. Nico, P. Long, D. Newcomer, and E. Arntzen.   Contributed.  Comparison of Field Groundwater Biostimulation Experiments Using Polylactate and Lactate Solutions at the Chromium Contaminated Hanford 100-H Site.  June 27, 2011, Reno, NV.  The International Symposium on Bioremediation and Sustainable Environmental Technologies.
  • Hazen, T. C.  Invited Symposium.  The Gulf Oil Spill.  June 27, 2011, Reno, NV.  The International Symposium on Bioremediation and Sustainable Environmental Technologies.

    ………News Blog.  Berkeley Lab Scientist Wins PNNL’s Outstanding Lecture Award.  June 17, 2011, Berkeley, CA.  Today at Berkeley Lab, http://today.lbl.gov/2011/06/17/berkeley-lab-scientist-wins-pnnl’s-outstanding-lecture-award/

    Hazen, T. C.  Invited Seminar.  The Gulf Oil Spill.  June 15, 2011, Emeryville, CA.  JBEI Seminar Program.

    Hazen, T. C.  Invited Seminar.  A Systems Biology Approach to the Deepwater Horizon Oil Spill – an example of Team Science for ecological disasters.  June 13, 2011, Richland, WA.  Pacific Northwest National Laboratory Frontiers Lecture Series.

May

  • Baelum, J., S. E. Borglin, J. L. Fortney, R. Lamendella, O. U. Mason, M. Bill, M. E. Conrad, S. Malfatti, S. Tringe, H.-Y. Holman, T. C. Hazen, and J. K. Jansson.  Contributed.  Simulations of the microbial community response to the Deepwater Horizon Oil spill in the Gulf of Mexico using a microcosm approach.  May 30, 2011, Corfu, Greece.  BAGECO2011 Meeting.
  • Hazen, T. C.  Invited Keynote.  Microbial Response to the Deepwater Horizon Oil Spill in the Gulf of Mexico.  May 30, 2011, Corfu, Greece.  BAGECO2011 Meeting.

    Hazen, T. C.  TV interview.  Impact Of BP Spill May Not Be Catastrophic.  May 22, 2011,  San Francisco, CA.  KTVU http://www.ktvu.com/news/27986393/detail.html

    Dickey Zakaib, G.  NewsBlog.  Role of bacteria in Gulf oil spill under the microscope.  May 22, 2011, Nature, http://blogs.nature.com/news/2011/05/microbiology_meeting_highlight.html.

    Hazen, T. C.   Invited Seminar.  Can Mother Nature Take a Punch? - Microbes and the BP Oil Spill in the Gulf of Mexico.  May 22, 2011, New Orleans, LA.  Tulane University

    Hazen, T. C.  Invited Symposium.  Microbial Ecogenomic Response to the Deepwater Horizon Oil Spill in the Gulf of Mexico - Deepwater Horizon & Beyond.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Hu*, P., C. H. Wu, T. Desantis, P. Jasrotia, H. Woo, K. Kearcher, S. Meiss, T. Torok, L. D. Taylor, W. Overholt, S. Green, G. L. Andersen, J. E. Kostka, and T. C. Hazen.  Contributed. Validation of MycoChip — A Microarray for Fungal Community Studies.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Bælum*, J., S. Borglin, J. L. Fortney, R. Lamendella, O. U. Mason, M. Bill, M. E. Conrad, H-Y. Holman, S. A. Malfatti, S. Tringe, T. C. Hazen, and J. K. Jansson.  Contributed.  Microcosm Simulations of the Microbial Community Response to the Deepwater Horizon Oil Spill in the Gulf of Mexico.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Zhang*, P., W-M. Wu, J. Van Nostrand, Y. Deng, Z. He, T. Gihring, G. Zhang, C. Schadt, D. Watson, P. Jardine, C. Criddle, S. Brooks, T. Marsh, J. Tiedje, T. C. Hazen, and J. Zhou.  Contributed.  Diverse Functional Genes of Microbial Community Stimulated with Emulsified Vegetable Oil for in situ U(VI) Reduction.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Gorur*, A., C. M. Leung, A. Tauscher, D. Jorgens, S. Reveco, J. Remis, B. Lam, J. T. Geller, T. C. Hazen, T. Juba, S. Chhabra, J. Wall, M. Biggin, K. H. Downing, and M. Auer.  Contributed.  High Throughput Subcellular Protein Expression and Localization Studies in the Anaerobic Sulfate Reducer Desulfovibrio vulgaris.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Zhou*, A., Z. He, E. Baidoo, K. Hillesland, M. P. Joachimiak, J. Baumohl, P. Benke, A. Mukhopadhyay, P. S. Dehal, A. P. Arkin, D. Stahl, T. C. Hazen, and J. Zhou.  Contributed.  Transcriptomics and Metabolites Assay of Salt-Adapted Desulfovibrio vulagris Hildenborough in Experimental Evolution.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Chhabra*, S., B. Gold, N. L. Liu, S. Reveco, T. R. Juba, J. D. Wall, B. R. Lam, J. T. Geller, T. C. Hazen, M. Choi, M. D. Biggin, E. D. Szakal, S. Allen, H. Witkowska, J-M. Chandonia, and G. P. Butland.  Contributed.  Engineering Desulfovibrio vulgaris Hildenborough for High Throughput Tandem Affinity Purification of Protein Complexes.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Walian*, P. J., S. Allen, L. Zeng, E. Szakal, S. C. Hall, S. J. Fisher, R. Santos, B. Lam, J. T. Geller, T. C. Hazen, J. M. Chandonia, H. E. Witkowska, M. D. Biggin, and B. K. Jap.  Contributed.  High-throughput Pipeline for the Purification and Identification of Desulfovibrio vulgaris Membrane Protein Complexes.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Chandonia*, J-M., M. Dong, M. Shatsky, H. Liu, S. E. Brenner, L. Yang, T. C. Hazen, J. T. Geller, M. Choi, E. D. Szakal, J. Jin, H. E. Witkowska, A. P. Arkin, and M. D. Biggin.  Contributed.  Accurate, High-Throughput Identification of Stable Protein Complexes Using a Tagless Strategy.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Moberly*, J. G., T. J. Phelps, C. W. Schadt, M. Podar, S. D. Brown, Z. K. Yang, M. M. Drake, T. C. Hazen, A. P. Arkin, A. V. Palumbo, and D. A. Elias.  Contributed.  Development of a Model Microbial Community for a Systems Biology Level Assessment of Metal-reduction.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Martinez*, R. J., C. H. Wu, M. J. Beazley, G. L. Andersen, T. C. Hazen, M. Taillefert, and P. A. Sobecky.  Contributed.  Microbial Phosphatase Activity Involved in Subsurface Uranium Sequestration.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Liu*, P., R. J. Meagher, Y. Light, S. Yilmaz, R. Chakraborty, A. P. Arkin, T. C. Hazen, and A. K. Singh.  Contributed.  Microfluidic Fluorescence in situ Hybridization and Flow Cytometry Microdevice for Environmental Microbial Detection.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Borglin*, S. E., Y. Piceno, D. C. Joyner, J. Fortney, and T. C. Hazen.  Contributed.  Analysis of microbial community structure and alkane composition in Mississippi Canyon oil spill using phospholipid fatty acid analysis.  May 24, 2011, New Orleans, LA.  ASM annual Meeting.

    Joyner*, D. C., R. Chakraborty, S. E. Borglin, D. H. Long, and T. C. Hazen.  Contributed.  High Throughput Metabolic Phenotype Profiling of Oil and Dispersant Degrading Consortia from the MC252 Oil Spill in the Gulf of Mexico.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Chakraborty*, R., S. E. Borglin, D. H. Long, D. C. Joyner, and T. C. Hazen.  Contributed.  Interaction of MC252 oil and COREXIT with isolates and enrichments from Gulf of Mexico.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Geller*, J. T., H. Woo, D. C. Joyner, S. Kendall, and T. C. Hazen.  Contributed.  Microfluidic Studies of Nitrate Stress on Shewanella oneidensis Biofilms.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Lamendella*, R., S. Borglin, J. Hultman, O. U. Mason, F. Reid, J. Fortney, K. Wetmore, J. Kuehl, H.- C. Lim, T. C. Hazen, and J. Jansson.  Contributed.  Impact of the Deepwater Horizon Oil Spill on beach microbial community dynamics.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Mosher*, J. J., T. J. Phelps,  S. L. Carroll, M. M. Drake, C. W. Schadt, M. Podar, S. D. Brown, T. C. Hazen, A. P. Arkin, A. V. Palumbo, B. A. Faybishenko, and D. A. Elias.  Contributed.  Isolation of metal reducing organisms from lactate-enriched contaminated groundwater.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Mason*, O. U., R. Lamendella, J. Hultman, R. Mackelprang, S. Borglin, L. M. Tom, E. A. Dubinsky, J. Fortney, T. C. Hazen, and J. K. Jansson.  Contributed.  Metagenomic analysis of the deep-sea microbial community response to the Deepwater Horizon oil spill.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    D'Haeseleer*, P., J. M. Gladden, A. M. Redding-Johanson, C. J. Petzold, P. I. Benke, M. Allgaier, D. C. Chivian, J. S. VanderGheynst, T. C. Hazen, B. A. Simmons, and S. W. Singer.  Metagenomics, Proteomics, and Metabolic Reconstruction of a Thermophilic Feedstock-adapted Bacterial Community.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Rajan*, S., R. J. Martinez, M. J. Beazley, Y. Piceno, G. L. Andersen, T. C. Hazen, P. A. Sobecky, and B. Mortazavi.  Contributed.  Coastal Alabama Microbial Responses to the Deepwater Horizon Oil Spill.  May 22, 2011, New Orleans, LA.  ASM annual Meeting.

    Hazen, T. C.   Keynote.  Can Mother Nature Take a Punch? - Microbes and the BP Oil Spill in the Gulf of Mexico.  May 18, 2011, Chicago, IL.  REMTEC.

    Grossman, E.  Journal.  Murky Waters.  May15, 2011, Earth Island Journal. http://www.earthisland.org/journal/index.php/eij/article/murky_waters

    Fancher, L.  Newspaper.  Mother Nature Cleans up Gulf Oil Spill.  May 12, 2011, Walnut Creek, CA.  Walnut Creek Patch.  http://walnutcreek.patch.com/articles/mother-nature-cleans-up-gulf-oil-spill

    Hazen, T. C.   Keynote.  Microbes Cope with Calamity: Gulf Oil Spill.  May 9, 2011, Walnut Creek, CA.  JGI@Lesher: The Deal with Carbon: How Earth’s Mighty Microbes Respond.  http://www.jgi.doe.gov/News/lesher/may2011.html

    Bohan, S.  Newspaper.  Lawrence Berkeley Lab scientists tinker with microbes to battle climate change.  May 6, 2011, Walnut Creek, CA.  Contra Costa Times.  http://www.contracostatimes.com/bay-area-news/ci_18011392?nclick_check=1

April

  • Hazen, T. C.   Invited Darden Lecture.  Can Mother Nature Take a Punch? - Microbes and the BP Oil Spill in the Gulf of Mexico.  April 20, 2011, Tuscaloosa, AL.  Darden Lecture, Department of Biology, University of Alabama.
  • Cassidy, G.  News.  One Year Later: Did Bacteria Save Oil and Gas Stocks?  April 20, 2011  Bezingas Real Time News.  http://www.benzinga.com/trading-ideas/long-ideas/11/04/1011228/one-year-later-did-bacteria-save-oil-and-gas-stocks

    Lovett, R. A.  Magazine.  Why Did Huge Oil Plumes Form After the Gulf Spill?  April 20, 2011, National Geographic Daily News.  http://news.nationalgeographic.com/news/2011/04/110420-gulf-oil-spill-anniversary-plumes-dispersants-science-nation/

    Anthony, L.  TV Interview.  UC researcher reflects on Gulf oil spill.  April 15, 2011, San Francisco, CA, ABC news  http://abclocal.go.com/kgo/story?section=news/local/east_bay&id=8075967

    Kaufman, L.  Newspaper.   Nearly a year after spill, Gulf studies yield more than damage.  April 15, 2011.  New York Times.  http://www.bendbulletin.com/article/20110412/NEWS0107/104120407/

    Goldenberg, S.  Newspaper.  Has BP really cleaned up the Gulf oil spill?  April 14, 2011.  London, UK  The Guardian.  http://www.guardian.co.uk/environment/2011/apr/13/deepwater-horizon-gulf-mexico-oil-spill

    Walian*, P. J., S. Allen, L. Zeng, E. D. Szakal, H. Liu, S. C. Hall, S. J. Fisher, R. Santos, B. Lam, J. T. Geller, T. C. Hazen, J.-M. Chandonia, H. E. Witkowska, M. D. Biggin, and B. K. Jap.  Invited.  High-Throughput Pipeline for the Purification and Identification of Desulfovibrio vulgaris Membrane Protein Complexes.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    Chhabra,*, S., M. Auer, G. Butland, J.-M. Chandonia, T. C. Hazen, J. D. Wall, E. Witkowska, D. Elias, M. Adams, M. Fields, J. Liphardt, G. Hura, and D. Stahl.  Invited.  High Throughput Production and Analysis of Genetically Engineered Desulfovibrio vulgaris Strains via Homologous Recombination.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    Chandonia*, J.-M., M. Dong, M. Shatsky, H. Liu, L. Yang, T. C. Hazen, J. T. Geller, M. Choi, E. D. Szakal, S. Allen, S. E. Brenner, S. C. Hall, S. J. Fisher, S. Kumar, F. L. Poole, M. Adams, J. Jin, H. E. Witkowska, A. P. Arkin, and M. D. Biggin.  Invited.  Accurate, High-Throughput Identification of Stable Protein Complexes in Desulfovibrio vulgaris using a Tagless Strategy.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    Butland, G. P., S. R. Chhabra, B. Gold, N. L. Liu, S. Reveco, T. R. Juba, J. D. Wall, B. R. Lam, J. T. Geller, T. C. Hazen, M. Choi, M. D. Biggin, E. D. Szakal, S. Allen, H. Liu, H. E. Witkowska, and J.-M. Chandonia.  Invited.  High Throughput Identification of Protein Complexes from Desulfovibrio vulgaris by a Tandem Affinity Purification Pipeline.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    Gorur, A., C. M. Leung, S. Chhabra, T. Juba, A. Tauscher, S. Reveco, J. P. Remis, B. Lam, J. T. Geller, T. C. Hazen, M. Biggin, J. M. Chandonia, K. H. Downing, J. Wall, and M. Auer*.  Invited.  Subcellular Localization of Proteins in the Anaerobic Sulfate Reducer Desulfovibrio vulgaris via SNAP-Tag Labeling and Photoconversion.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    Liu, P., R. J. Meagher, Y. K. Light, S. Yilmaz, R. Chakraborty, A. P. Arkin, T. C. Hazen, and A. K. Singh*.  Invited.  Microfluidic Tools for Single-Cell Genomic Analysis of Environmental Bacteria.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    Tu, Q., Y. Deng, Z. He, H. Yu, Y. Qin, A. Zhou, J. Xie, Z. Lu, J. Voordeckers, Y. Lee, K. Xue, J. Van Nostrand, L. Wu, Y. Jiang, T. C. Hazen, P. Adams, and J. Zhou*.  Invited.  Development of Metagenomic Technologies for Analyzing Microbial Communities.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    Yoon*, S. H., D. J. Reiss, J. C. Bare, D. Tenenbaum, M. Pan, J. Slagel, S. Lim, M. Hackett, A.-L. Menon, M. W.W. Adams, A. Barnebey, S. M. Yannone, J. A. Leigh, and N. S. Baliga. PI: N. S. Baliga, Co-PIs: J. A. Leigh, M. Hackett, W. Whitman, P. Adams, A. P. Arkin, T. C. Hazen, M. W.W. Adams, G. Hura, S. M. Yannone, S. Holbrook, G. Siuzdak, and J. A. Tainer.  Invited.  Parallel Evolution of Transcriptome Structure During Genome Reorganization.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    Hillesland,*, K. L., B. Meyer,* N. Pinel, N. Elliott, M. Joachimiak, J. Kuehl, A. Deutschbauer, A. Zhou, Z. He, J. Zhou, D. Elias, T. C. Hazen, A. P. Arkin, and D. A. Stahl*.  Invited.  Adaptive Evolution and Physiology of Nascent Microbial Mutualisms.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    De Leon, K. B., B. D. Ramsay, D. R. Newcomer, B. Faybishenko, T. C. Hazen, J. Zhou, and M. W. Fields*.  Invited.  Microbial Community Dynamics from Groundwater and Surrogate Sediments During HRC® Biostimulation for Cr(VI)-Reduction.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    Chakraborty*, R., D. Joyner, B. A. Faybishenko, M. Fields, T. Torok, G. L. Andersen, and T. C. Hazen.  Invited.  Integrated Microbiological Approaches to Characterize Cr(VI)-Reducing Microbial Community at the DOE Hanford 100H Site.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy.

    Mosher, J. J., J. G. Moberly, C. W. Schadt, T. J. Phelps, M. Podar, S. D. Brown, A. V. Palumbo, M. W.W. Adams, D. A. Stahl, K. L. Hillesland, J. D. Wall, M. W. Fields, T. C. Hazen, and D. A. Elias*.  Invited.  Characterization of Naturally Occurring and Model Microbial Communities.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy. 

    D’Haeseleer, P., J. M. Gladden, A. M. Redding-Johanson, C. J. Petzold, P. I. Benke, M. Allgaier, D. C. Chivian, J. S. VanderGheynst, T. C. Hazen, B. A. Simmons, and S. W. Singer.  Invited.  Metagenomics, Proteomics, and Metabolic Reconstruction of a Thermophilic Feedstock-Adapted Bacterial Community.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy. 

    DeAngelis, K. M., J. Fortney, S. Borglin, W. Silver, and T. C. Hazen*.  Invited.  Feedstock-Adapted Anaerobic Consortia Derived from Tropical Forest Soils.  April 10-13, 2011, Crystal City, VA.  Joint Meeting 2011 Genomic Science Awardee Meeting IX and USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Meeting, U. S. Department of Energy. 

    Hazen, T. C.  Invited Panel. Panel 1: The Interpretation of Scientific Data for Disaster April 9, 2011, Athens, GA.  Response After the Spill: A Dialogue Between Students and Policymakers. Roosevelt Institute, University of Georgia.

    Hazen, T. C.  Invited Seminar.  Can Mother Nature Take a Punch? - Microbes and the BP Oil Spill in the Gulf of Mexico.  April 8, 2011, Athens, GA.  Department of Microbiology, University of Georgia.

March

Hazen, T. C.  Invited Symposium.  The Gulf Oil Spill – Ecogenomics and Ecoresilience.  Genomics of Energy & Environment.  March 22, 2011, Walnut Creek, CA.  DOE Joint Genome Institute annual user meeting.  http://www.youtube.com/watch?v=pkcNErjG1fk

  • Mason*, O. U., T. C. Hazen, P. Chain, E. A. Dubinsky, J. Fortney, J. Han, J. Hultman, R. Lamendella, R. Mackelprang, L. M. Tom, S. G. Tringe, T. Woyke, E. M. Rubin, and J. K. Jansson.  Contributed.  ‘Omics’ analyses of the deep-sea microbial community response to the Deepwater Horizon Oil Spill.  March 22, 2011, Walnut Creek, CA.  DOE Joint Genome Institute annual user meeting.

    DeAngelis*, K. M., W. L. Silver, and T. C. Hazen.  Contributed.  Anaerobic deconstruction of switchgrass by tropical soil-derived feedstock adapted consortia.  March 22, 2011, Walnut Creek, CA.  DOE Joint Genome Institute annual user meeting.

    Hazen, T. C.  Invited Seminar.  Can Mother Nature Take a Punch? - Microbes and the BP Oil Spill in the Gulf of Mexico.  March 3, 2011, Orinda, CA.  Science Night for Orinda Intermediate School.

    Hazen, T. C.  Invited Seminar.  Open ocean studies on the Deepwater Horizon oil incident.  March 3, 2011, Berkeley.  Presentation arranged by the Center for Safe Energy: for the Environment and Energy ministers of the Republic of Kazakhstan.

February

  • Hazen, T. C.  Invited Seminar.  Open ocean studies on the Deepwater Horizon oil incident.  February 23, 2011, Madison, WI.  University of Wisconsin.
  • Hazen, T. C.  Invited Seminar.  Open ocean studies on the Deepwater Horizon oil incident.  February 21, 2011, West Lafayette, IN.  Purdue University Sigma Xi meeting.

January

Ecology Department Presentations & Media (2010)

December

  • Hazen, T. C.  Invited Symposium.  Open ocean studies on the Deepwater Horizon oil incident.  December 18, 2010, Berkeley, CA.  Science@Cal.

  •  Vilcaez*, J., L. Li, S. S. Hubbard, and T. C. Hazen.  Contributed.  Biodegradation of Deep-Sea Oil Spill at the Gulf of Mexico: an Estimate of Half Life Time.  December 13, 2010, San Francisco, CA.  AGU annual meeting.

  •  Hazen, T. C.  Invited Press Conference.  Open ocean studies on the Deepwater Horizon oil incident.  December 12, 2010, Berkeley, CA.  LBNL invited press conference for AGU annual meeting.

November

  • Andersen*, G. L. , E. Dubinsky, C. Wu, and Y. Piceno.  Invited Symposium.  A Phylogenetic Microarray Approach to Monitoring and Source Tracking Coastal-Zone Pollution.  November 17, 2010, San Diego, CA.  Sustainable Approaches to Remediation of Contaminated Land (SARCL-2010) and Contaminated Site Management (CSM-2010).

  • Dubinsky*, E., G. L. Andersen, M. E. Concord, O. U. Mason, Y. Piceno, W. T. Stringfellow, J. Zhou, and T. C. Hazen.  Invited Symposium.  Response of Petroleum-Degrading Microbial Communities to the Deepwater Horizon Oil Spill at the Surface and in the Deep.  November 17, 2010, San Diego, CA.  Sustainable Approaches to Remediation of Contaminated Land (SARCL-2010) and Contaminated Site Management (CSM-2010).

  • Borglin*, S., O. U. Mason, E. Dubinsky, J. Fortney, R. Lamendella, D. Joyner, Y. Piceno, and T. C. Hazen.  Invited Symposium.  Analysis of Microbial Community Structure in Crude Oil and Oil Spill Samples Using Phospholipid Fatty Acid Analysis.  November 17, 2010, San Diego, CA.  Sustainable Approaches to Remediation of Contaminated Land (SARCL-2010) and Contaminated Site Management (CSM-2010).

  • Hazen, T. C. Keynote. Open ocean studies on the Deepwater Horizon oil incident. November 17, 2010, Martinez, CA. Contra Costa Watershed Forum.

  • Hazen, T. C. Invited Symposium. Open ocean studies on the Deepwater Horizon oil incident. November 12, 2010, Biloxi, MS. Vibrios in the Environment 2010.

  • Hazen, T. C. Keynote. The Gulf of Mexico Oil Spill - Rescue from Microbiology? November 9, 2010, Copenhagen, Denmark. Danish Society for Microbiology annual meeting.

  • Singer*, S. W., J. M. Gladden, P. D'haeseleer, M. Allgaier, D. C. Chivian, T. C. Hazen, J. S. Vandergheynst, P. Hugenholtz. and B. A. Simmons.  Contributed.  Targeted Discovery of Enzymes From Enriched Microbial Consortia for High Temperature Saccharification of Ionic-Liquid Pre-Treated Biomass.  November 6, 2010, Salt Lake City, UT.  American Institute of Chemical Engineers annual meeting.

  • Northen*, T., W. Reindl, K. Deng, J. Gladden, S. Singer, A. Singh, T. C. Hazen, B. Simmons, P. Adams, and J. Keasling.  Contributed.  High Throughput Multiplexed GlycoChip Enzymatic Assays for Biofuels Development.  November 6, 2010, Salt Lake City, UT.  American Institute of Chemical Engineers annual meeting.

  • Hazen, T. C.  Invited.  Oil Spill Aftermath.  November 3, 2010, San Diego, CA.  Discover Cal Lecture Series.

  • Hazen, T. C.  Invited.  LBNL Oil Spill Research.  November 3, 2010, Berkeley, CA.  Town Hall Office of Chief Finacial Officer LBNL.

  • Hazen, T. C. Invited. Biosciences in Earth Sciences Division. November 2, 2010, Berkeley, CA. LBNL Scientific Advisory Committee.

  • Hazen, T. C. Invited. Oil Spill Aftermath. November 1, 2010, San Francisco, CA. Discover Cal Lecture Series.

October

  • Hazen, T. C. R. M. Atlas, D. J. Grimes, J. Spain, and J. M. Suflita. Steering Committee. Microbes and Oil Spills Mini-Colloquium. October 28, 2010, Washington, DC. American Academy of Microbiology.

  • Hazen, T. C. Invited. Deep Water Horizon Oil Spill - Intrinsic Bioremediation or Mother Natures’ Abilities to Cleanup Our Messes. October 22, 2010, San Francisco, CA. City College of San Francisco.

  • Hazen, T. C. Invited. MEHR Program Ecogenomics Core Review. October 22, 2010, Berkeley, CA. Energy Biosciences Institute, University of California at Berkeley.

  • Hazen, T. C. Invited. Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria. October 8, 2010, Berkeley, CA. Civil and Environmental Engineering, University of California at Berkeley.

  • Hazen, T. C. Invited Keynote. Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria. October 7, 2010, Albany, CA. Northern California Science Writers Association Dinner.

  • Hazen, T. C. Invited. Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria. October 2, 2010, Berkeley, CA. LBNL Open House.

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September

  • Hazen, T. C. Invited. Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria. September 29, 2010, Houston, TX. BP Deep Sea Oil Release Water Column Meeting.

  • Hazen, T. C. Invited. Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria. September 27, 2010, Washington, DC. National Commission on the BP Deepwater Horizon Oil Spill and Offshore Drilling.

  • Hazen, T. C. Invited. Ecogenomics and biogeochemistry enables understanding of the Deepwater Horizon disaster in the Gulf of Mexico. September 20, 2010, Granada, Spain. University of Granada.

  • Joyner*, D. C., Hazen, T. C. Invited. Phenotypic MicroArray for bioenergy applications. September 13-15, 2010, Florence, Italy. Florence Conference on Phenotype Microarray Analysis of Microorganisms.

  • Hazen, T. C. Invited. Phenotypic MicroArray for bioenergy applications. September 13-15, 2010, Florence, Italy. Florence Conference on Phenotype Microarray Analysis of Microorganisms.

  • Hazen, T. C. Invited. The Gulf of Mexico Oil Spill. September 13-15, 2010, Florence, Italy. Florence Conference on Phenotype Microarray Analysis of Microorganisms.

August

  • Hazen, T. C. Convener. Microbial ecology of the 2010 Deepwater Horizon Oil Spill. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Hazen, T. C. Invited. The Spill and Ecogenomics. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • DeAngelis*, K. M., M. Allgaier, P. D’haeseleer, J. L. Fortney, P. Hugenholtz, B. Simmons, and T. C. Hazen. Contributed. Analysis of anaerobic lignocellulose decomposing consortia from Puerto Rico tropical forest soils. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • De Leon*, K., D. Newcomer, B. Faybishenko, B. Ramsay, T. C. Hazen, M. Fields. Contributed. Microbial community dynamics from groundwater and surrogate sediments during HRC® stimulation at a chromium contaminated field site. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Allgaier*, M., A. Reddy, J. I. Park, N. Ivanova, P. D’haeseleer, S. Lowry, R. Sapra, T. C. Hazen, B. A. Simmons, J. S. VanderGheynst, and P. Hugenholtz. Contributed. Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost microbial community. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Van Nostrand*, J., P. Waldron, D. Watson, Z. He, L. Wu, P. Jardine, T. C. Hazen, and J. Zhou. Contributed. Geochip-based analysis of groundwater microbial communities across a gradient of pH, heavy metal, and nitrate contamination. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Zhang*, P., W. Wu, J. Van Nostrand, Y. Deng, Z. He, T. Gihring, G. Zhang, C. Schadt, D. Watson, P. Jardine, S. Brooks, T. Marsh, J. Tiedje, T. C. Hazen, and J. Zhou. Contributed. Microarray-based characterization of microbial community functional structure during in situ biostimulation at a uranium-contaminated aquifer. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology>

  • Martinez*, R., M. Beazley, C. Wu, G. Andersen, T. C. Hazen, M. Taillefert, and P. Sobecky. Contributed. Microbial phosphatase activity involved in subsurface uranium sequestration. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Chakraborty*, C., J. Fortney, A. Zhou, M. Joachimiak, A. Mukhopadhyay, S. Borglin, Z. He, A. P. Arkin, J. Zhou, and T. C. Hazen. Contributed. Investigation of osmotic stress response in the anaerobic metal-reducing microbe Geobacter metallireducens, strain GS -15. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Goodheart*, D. B., W. L. Silver, T. C. Hazen, and M. K. Firestone. Contributed. The Diversity and Activity of Methanogens in a Wet, Tropical Forest during Plant Decomposition. Contributed. Lactate enrichment of uranium and chromium contaminated Hanford groundwater samples. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Mosher*, J. J., M. M. Drake, S. L. Carroll, Z. K. Yang, C. W. Schadt, S. D. Brown, M. Podar, T. C. Hazen, A. P. Arkin, T. J. Phelps, A. V. Palumbo, B. A. Faybishenko, and D. A. Elias. Contributed. Lactate enrichment of uranium and chromium contaminated Hanford groundwater samples. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Mason*, O., A. Iavarone, L. Tom, S. Borglin, R. Chakraborty, T. C. Hazen, and J. Jansson. Contributed. Pressure assisted “omics” analyses of resident microbes in petroleum reservoirs. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Mason*, O.*, A. Probst, E. Dubinsky, Y. Piceno, L. Tom, J. Fortney, R. Lamendella, T. C. Hazen, and J. Jansson. Contributed. The microbial community of a dispersed, deep-sea oil plume. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Singer, S., J. Gladden, M. Allgaier, A. Reddy, J. VanderGheynst, T. C. Hazen, P. Hugenholtz, P. D'haeseleer, B. Simmons. Contributed. Targeted enzyme discovery in thermophilic feedstock-adapted microbial communities using proteogenomic and biochemical techniques. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Dubinsky, E., T. DeSantis*, Y. Piceno, O. Mason, N. Singh, A. Probst, D. Joyner, R. Chakraborty, T. C. Hazen, G. Andersen. Contributed. Phylochip assay finds deepwater oil plume enrichment of psychrophilic oil-degrading bacteria. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Wu*, C. H., E. A. Dubinsky, J. Hulls, S. R. Osman, T. C. Hazen, and G. L. Andersen. Contributed. Temporal dynamics of cattle and human fecal microbial communities in fresh and marine waters. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Wells*, G. F., C. H. Wu, Y. M. Piceno, B. Eggleston, E. L. Brodie, T. Z. DeSantis, G. L. Andersen, T. C. Hazen, C. A. Francis, and C. S. Criddle. Contributed. Immigration as a driver of microbial community structure: sloughing from a biofilm bioreactor is linked to downstream-activated sludge community dynamics. August 22-27, 2010, Seattle, WA. ISME 13 – 13th International Symposium on Microbial Ecology.

  • Gupta, S. News Magazine. Gulf spill: Is the oil lurking underwater? August 20, 2010. New Scientist. http://www.newscientist.com/article/dn19345-gulf-spill-is-the-oil-lurking-underwater.html

  • Hazen, T. C. Invited. Gulf spill biodegradation rates and ecogenomics. August 19, 2010, Teleconference. NOAA National Science Response Team.

  • Hazen, T. C. Invited. Systems Biology: The New Frontier for Environmental Biotechnology. August 11, 2010, Berkeley, CA. Army Sponsored Microbial Data Integration Workshop.

  • Wurth, J. Newspaper. Professor's expertise might help with cleanup of future oil spills. August 8, 2010. Urbana-Champaign, IL. The News Gazette. http://www.news-gazette.com/news/environment/2010-08-08/professors-expertise-might-help-cleanup-future-oil-spills.html

  • …….. News Blog. BP Watch: Hiding the oil. August 7, 2010. http://www.thepoliticalcarnival.net/2010/08/bp-watch-hiding-the-oil/

  • Hazen, T. C. Invited. Gulf spill biodegradation rates and ecogenomics. August 6, 2010, Teleconference. National Incident Response JAG.

  • ……. News Blog. Gulf oil spill: White House accused of spinning report. August 5, 2010. http://online-stocktrading.com/gulf-oil-spill-white-house-accused-of-spinning-report.html

  • Goldenberg, S. News Blog. Gulf oil spill: White House accused of spinning report. August 5, 2010. London, UK. Guardian. http://www.guardian.co.uk/environment/2010/aug/05/oil-spill-white-house-accused-spin

  • The Medical Muckraker. News Blog. Did oil-gobbling bacteria rid the Gulf of BP’s submarine oil plumes? August 4, 2010. http://medicalmuckraker.wordpress.com/2010/08/04/did-oil-gobbling-bacteria-rid-the-gulf-of-bps-submarine-oil-plumes/

  • Gupta, S. News Magazine. Deep oil in Gulf appears to have vanished. August 4, 2010. New Scientist. http://www.newscientist.com/article/dn19264-gulf-oil-slick-in-disappearing-trick.html

  • Borglin*, S. E., O. U. Mason, E. Dubinsky, J. Fortney, R. Lamendella, D. Joyner, Y. Piceno, and T. C. Hazen. Invited. Analysis of microbial community structure in crude oil and oil spill samples using phospholipid fatty acid analysis. August 2-5, 2010, San Francisco, CA. Annual Meeting of the Society for Industrial Microbiology.

  • Dubinsky*, E. A., G. L. Andersen, M. E. Conrad, O. U. Mason, Y. M. Piceno, W. T. Stringfellow, J. Zhou, and T. C. Hazen. Invited. Response of petroleum-degrading microbial communities to the Deepwater Horizon oil spill at the surface and in the deep. August 2-5, 2010, San Francisco, CA. Annual Meeting of the Society for Industrial Microbiology.

  • Chakraborty*, R., and T. C. Hazen. Invited. Microbial community changes during sustained Cr(VI) reduction at the 100H site in Hanford, WA. August 2-5, 2010, San Francisco, CA. Annual Meeting of the Society for Industrial Microbiology.

  • Mason*, O. U., E. A. Dubinsky, Y. M. Piceno, A. T. Iavarone, L. M. Tom, T. C. Hazen, and J. K. Jansson. Invited. “Omics” analyses of resident microbes in extreme environments such as petroleum reservoirs and deep sea oil plumes. August 2-5, 2010, San Francisco, CA. Annual Meeting of the Society for Industrial Microbiology.

  • Khudyakov, J. I., K. M. DeAngelis, H. Woo, S. Borglin, T. C. Hazen, and M. Thelen. Invited. Ionic liquid tolerance in Enterobacter cloacae, a lignocellulolytic bacterium isolated from tropical rain forest soil. August 2-5, 2010, San Francisco, CA. Annual Meeting of the Society for Industrial Microbiology.

  • Woo*, H. L., K. M. DeAngelis, T. C. Hazen, and B. A. Simmons. Contributed. Isolation of lignin- and cellulose- degrading bacteria from tropical soils for biofuel feedstock deconstruction. August 2-5, 2010, San Francisco, CA. Annual Meeting of the Society for Industrial Microbiology.

  • Hazen, T. C. Invited Symposium. Environmental Microbiology – Deconstruction Ecogenomics for Biofuels. August 2-5, 2010, San Francisco, CA. Annual Meeting of the Society for Industrial Microbiology.

  • Hazen, T. C. Invited Symposium. Environmental Microbiology - In Situ Bioremediation and Ecogenomics. August 2-5, 2010, San Francisco, CA. Annual Meeting of the Society for Industrial Microbiology.

  • Morgan, C. Newspaper. Recovery: Test of technology, nature, time. August 2, 2010. Randenton, FL. Brandenton. http://www.bradenton.com/2010/08/02/2474305/recovery-test-of-technology-nature.html

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July

  • Hazen, T. C. Invited. Gulf Oil Spill, Bioremediation the Hope and the Hype. July 1, 2010, Berkeley, CA. LBNL Center for Science and Engineering Education.

June

  • Hazen, T. C. Invited. Gulf Oil Spill, Update. June 29, 2010, Berkeley, CA. LBNL Earth Sciences Division Town Hall meeting.

  • Hazen, T. C. Invited. Forum on BP Oil Disaster. June 23, 2010, Walnut Creek, CA. Mt. Diablo Peace & Justice Center.

  • Waters, K. Online science news. Oil Spill Eaten By RidX? June 22, 2010. http://americaspeaksink.com/2010/06/oil-spill-eaten-by-ridx/

  • Paine, A. Online Science news. Tennesseans donate hair, pantyhose to sop up oil spill. June 20, 2010. http://www.tennessean.com/article/20100620/NEWS01/6200365/2067

  • Tasker, F. Online Science news. BP's Gulf leak boosts interests in oil-eating microbes. June 17, 2010. http://www.mcclatchydc.com/2010/06/17/96092/bps-gulf-leak-boosts-interests.html

  • Metzner, J. Science Blog. Pulse of the Planet. June 10, 2010. http://www.pulseplanet.com/pulsepicks/oilspill/

  • Smith, M. Science Blog. Bugs in the Water. June 7, 2010. http://likethedew.com/2010/06/10/bugs-in-the-water/ Read more: http://www.mcclatchydc.com/2010/06/17/96092/bps-gulf-leak-boosts-interests.html#ixzz0sZeDmmOF

  • Hazen, T. C. Invited. Systems Biology Approach to Bioremediation: Omics and Hydrobiogeochemical Processes. June 13-18, 2010, Knoxville, TN. Goldschmidt 2010: Earth, Energy and the Environment.

  • Tierney, J. Science Blog. BP's Detergents Might Cause More Harm. June 7, 2010. http://www.baycitizen.org/environment/story/hey-bp-detergents-might-cause-problems/comments/#comments

  • Hazen, T. C., E. Dubinsky, and O. U. Mason. Invited. Deepwater Horizon Oil Spill. June 4, 2010, Berkeley, CA. LBNL chapter of Institute for Nuclear and Particle Astrophysics (INPA)

May

April

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March

  • Zhang, P., W. Wu, J. D. Van Nostrand, Y. Deng, Z. He, T. Gihring, G. Zhang, C. W. Schadt, D. Watson, P. Jardine, S. Brooks, T. L. Marsh, J. M. Tiedje, T. C. Hazen, and J. Zhou. Invited. Geochip-based analysis of metabolic diversity of microbial communities during in situ biostimulation at a uranium-contaminated aquifer. March 2010, Washington, DC. Subsurface Biogeochemical Research (SBR) Contractor-Grantee Workshop.

  • Christensen, J. N., E. Sonnenthal, S. T. Brown, M. E. Conrad, L. Yang, S. Mukhopadhyay, C. I. Steefel, B. Faybishenko, and T. C. Hazen. Invited. Using Cr Isotopic Measurements Together with Reactive Transport Modeling to Monitor Stimulated Bio-containment at the 100H Test Site, Hanford, Washington. March 2010, Washington, DC. Subsurface Biogeochemical Research (SBR) Contractor-Grantee Workshop.

  • Hazen, T. C. Invited. Ecogenomics with MicrobesOnline and KnowledgeBase. March 2010, Washington, DC. Subsurface Biogeochemical Research (SBR) Contractor-Grantee Workshop.

  • Hazen, T. C. Invited. A Systems Biology Approach to the Environment Using Ecogenomics. March 2010, Berkeley, CA. Earth Sciences Division Review.

  • Reddy*, A. P., M. Allgaier, J. M. Gladden, S. Singer, P. Hugenholtz, B. Simmons, T. C. Hazen, and J. S. VanderGheynst. Contributed. Enrichment of highly efficient thermophilic microbial communities active on switchgrass and corn stover in a high-solids environment. March 21-25, 2010, San Francisco, CA. 239th ACS National Meeting & Exposition.

  • Byrne-Bailey, K. G., K. C. Wrighton, R. A. Melnyk T. C. Hazen, and J. D. Coates. Invited. The First Genome Sequence of a Gram-Positive Bacterium Isolated from a Microbial Fuel Cell: Thermincola potens strain JR. March 2010, Walnut Creek, CA. Joint Genome Institute Users Meeting.

February

  • Holman, H.-Y., E. Wozei, L. R. Comolli, S. A. Ball, S. E. Borglin, M. W. Fields, T. C. Hazen, and K. H. Downing. Invited. Real-Time monitoring of Chemical Environment in Cells During Stress-Adaptive Response. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

  • Arkin, A. P., E. Baidoo, K. Bender, P. I. Benke, A. Deutschbauer, M. Fields, T. C. Hazen, Z. He, D. C. Joyner, J. Keasling, K. Keller, E. G. Luning, A. Mukhopadhyay, L. Rajeev, J. Ray, J. D. Wall, G. Zane, A. Zhou, and J. Zhou. Invited. Laboratory models for the study of community interaction, functional stability, and survival. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

  • Arkin, A. P., E. Baidoo, P. Dehal, D. Elias, M. Fields, J. Geller, T. C. Hazen, Z. He, K. Hillesland, J. Keasling, K. Keller, M. Keller, L. Krumholz, B. Meyer, L. Miller, J. Mosher, A. Mukhopadhyay, A. Palumbo, T. Phelps, M. Podar, L. Rajeev, A. Redding, C. Schadt, D. Stahl, S. Stolyer, A. Venkateswaren, C. Walker, J. Wall, Z. Yang, G. Zane, A. Zhou, and J. Zhou. Invited. Laboratory models for the study of community interaction, functional stability, and survival. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

  • Ball, D. A., S. Chhabra, D. Elias, V. Fok, J. T. Geller, A. Gorur, T. C. Hazen, D. Jorgens, T. Juba, A. Leung, J. Remis, m. E. Singer A. Tauscher, J. Wall, M. Auer, and K. H. Downing. Invited. Towards localization of functionality in Desulfovibrio vulgaris by electron microscopy. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

  • Van Nostrand, J. D., L. Wu, P. Waldron, P. Zhang, Y. Deng, Z. He, W. Wu, S. Carroll, C. Schadt, A. Palumbo, D. Watson, C. Criddle, P. Jardine, T. C. Hazen, and J. Zhou. Invited. Applications of GeoChip for analysis of different microbial communities. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

  • Han, B. G., H. Liu, M. Dong, M. Shatsky, S. E. Brenner, P. Arbelaez, J. Malik, D. Typke, T. C. Hazen, J. T. Geller, H. J. Sterling, L. Yang, M. Choi, E. D. Szakal, S. Allen, S. C. Hall, Susan J. Fisher, E. R. Williams, J.-M. Chandonia, J. Jin, H. E. Witkowska, R. M. Glaeser, M. D. Biggin. Invited. High Throughput Identification, Purification and Structural Characterization of Soluble Protein Complexes in Desulfovibrio vulgaris. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

  • Walian, P. J., S. Allen, L. Zeng, E. Szakal, E. Johansen, H. Liu, S. C. Hall, S. J. Fisher, M. E. Singer, J. T. Geller, S. Lin, T. C. Hazen, H. E. Witkowska, M. D. Biggin, and B. K. Jap. Invited. Pipeline for Large-scale Purification and Identification of Desulfovibrio vulgaris Membrane Protein Complexes. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

  • Hazen, T. C., G. Anderson, S. Borglin, E. Brodie, S. van Dien, M. Fields, J. Fortney, J. Geller, E. Hendrickson, K. L Hillesland, H.-Y. Holman, J. Leigh, T. Lie, D. Joyner, R. Chakraborty, D. Elias, A. Mukhopadhyay, C. Schadt, D. Stahl, S. Stolyar, C. Walker, J. Wall, Z. Yang, H.-C. Yen, G. Zane, J. Zhou. Invited. Environmental Microbiology Core Research on Stress Response Pathways in Metal-Reducers ENIGMA:VIMSS:ESPP. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

  • Gladden*, J. M., A. M. Reddy, J. S. VanderGheynst, T. C. Hazen, B. A. Simmons, P. Hugenholtz, and S. W. Singer. Invited. Targeted enzyme discovery in feedstock-adapted microbial communities. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

  • Chhabra, S., G. Butland, D. Elias, S. Reveco, V. Fok, B. Gold, T. Juba, J.-M. Chandonia1, E. Witkowska, T. C. Hazen, J. Wall, and J. Keasling. Invited. Protein Complex Analysis Project (PCAP): Large-scale identification of proteinprotein interactions in Desulfovibrio vulgaris using tandem-affinity purification. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

  • DeAngelis, K. M., M. Allgaier, W. L. Silver, Y. Chavarria, J. Fortney. P. Hugenholtz, B. Simmons, K. Sublette, and T. C. Hazen. Invited. Trapping lignin degrading microbes in tropical forest soil. February 2010, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VIII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2010.

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January

  • Hazen, T. C. Invited. Systems Biology (Integration of the Omics, Bioinformatics, and Biogeochemistry): The New Frontier for Environmental Biotechnology. January 2010, Changsha, China. Central South China University.

  • Hazen, T. C. Invited. Life in the Slow Lane: Ecogenomics in Extreme Environments - Implications for Enhanced Oil Recovery. January 2010, Harbin, China. Harbin Institute of Technology.

  • Hazen, T. C. Invited. Systems Biology (Integration of the Omics, Bioinformatics, and Biogeochemistry): The New Frontier for Environmental Biotechnology. January 2010, Harbin, China. Harbin Institute of Technology.

  • Hazen, T. C. Invited. Targeted Enzyme Discovery using Metagenomics. January 2010, Harbin, China. Harbin Institute of Technology.

Ecology Department Presentations & Media (2009)

December

  • Hazen, T. C. Invited Chair. Environmental Remediation and Confirmatory Monitoring IV. December 2009, San Francisco, CA. American Geophysical Union Annual Meeting.

  • Hazen, T. C. Invited Chair. Environmental Remediation and Confirmatory Monitoring III. December 2009, San Francisco, CA. American Geophysical Union Annual Meeting.

  • Hazen, T. C. Invited Chair. Environmental Remediation and Confirmatory Monitoring II. December 2009, San Francisco, CA. American Geophysical Union Annual Meeting.

  • Faybishenko*, B. and T. C. Hazen. Contributed. Multiple Factor Analysis and k-Means Clustering-Based Classification of the DOE Groundwater Contaminant Database. December 2009, San Francisco, CA. American Geophysical Union Annual Meeting.

  • Hazen, T. C., E. Sonnenthal, S. Mukhopadhyay, C. Steefel, P. Long, and B. Faybishenko*. Contributed. Field and Numerical Modeling Study of Reductive Bioimmobilization of Cr (VI) in Groundwater at Hanford 100-H Site. December 2009, San Francisco, CA. American Geophysical Union Annual Meeting.

  • Hazen, T. C., B. Faybishenko, and P. Jordan. Invited. Characterization of a Contaminant Inventory at DOE Sites, as a Tool for Selecting Monitoring and Remediation Technologies. December 2009, San Francisco, CA. American Geophysical Union Annual Meeting.

  • Chakraborty, R., E. L Brodie, D. C Joyner, T. Torok, J. L Fortney, S. E Borglin, P. E Long, D. R Newcomer, S. Choudhuri, H. R Beller, Y. M Piceno, L. Tom, G. L Andersen, B. Faybishenko, and T. C. Hazen. Contributed. Microbial community changes during sustained Cr(VI) reduction at the 100H site in Hanford, WA. December 2009, San Francisco, CA. American Geophysical Union Annual Meeting.

  • Wu*, C. H., B. R. Lam, J. Chou, M. Bill, J. Henriksen, K. E. Wright, E. L. Brodie, G. L. Andersen, T. C. Hazen, Y. Fujita, and M. E. Conrad. Contributed. Microbial metabolism of triethylphosphate, a potential phosphate source for radionuclide mineralization. December 2009, San Francisco, CA. American Geophysical Union Annual Meeting.

  • Christensen, J. N., E. L. Sonnenthal, S. T. Brown, M. E. Conrad, L. Yang, S. Mukhopadhyay, C. I. Steefel, B. Faybishenko, and T. C. Hazen. Contributed. Using Cr Isotopic Measurements with Reactive Transport Modeling to Monitor Stimulated Bio-containment at the 100H Test Site, Hanford, Washington. December 2009, San Francisco, CA. American Geophysical Union Annual Meeting.

November

  • Hazen, T. C. and K. DeAngelis. Newsletter. MEHR: Tiny Organisms, Big Jobs Deep Underground. Novever 2009, Berkeley, CA. The EBInsider, Energy Biosciences Institute.

  • Hazen, T. C. Newsletter. New Biosafety Committee Chair Appointed. 19 November 2009, Berkeley, CA. Today at Berkeley Lab (http://www.lbl.gov/publicinfo/newscenter/tabl/).

October

  • Hazen, T. C. Invited. Life in the Slow Lane: Ecogenomics in Extreme Environments - Implications for Enhanced Oil Recovery. October 2009, Berkeley, CA. University of California at Berkeley, Energy Biosciences Institute Seminar.

  • Martinez*, R. J., K. Salome, C. W., T. C. Hazen, G. L. Andersen, M. Taillfert, and P. A. Sobecky. Contributed. Uranium Immobilization by the Activities of Microbial Phosphatases. October 2009, Portland, OR. Geological Society of America Annual Meeting.

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September

  • Hazen, T. C., and G. L. Andersen. Invited. LBNL SuperChip Grand Challenge. September 2009, Washington, DC. Science and Technology, U. S. Department of Homeland Security.

  • Dubinsky, E., C. Wu, J. Hulls, T. C. Hazen, and G. L. Andersen. Contributed. A complete microbial community approach to tracking fecal pollution in coastal waters. September 2009, San Francisco, CA. 9th Biennial State of the San Francisco Estuary Conference.

August

July

  • Hazen, T. C. and B. A. Simmons. Invited Symposia. Systems Biology Approaches to Environmental Microbial Adaptations for Bioenergy Products. July 2009, Toronto, Canada. Society for Industrial Microbiology Annual Meeting.

  • DeAngelis, K., W. Silver, P. D’haseleer, J. Fortney, M. K. Firestone, and T. C. Hazen. Invited. Puerto Rico tropical forest soils as reservoirs for novel lignocellulolytic enzymes and organisms July 2009, Toronto, Canada. Society for Industrial Microbiology Annual Meeting.

  • Hazen, T. C. Invited. Systems Biology (Integration of the Omics, Bioinformatics, and Biogeochemistry): The New Frontier for Environmental Biotechnology. July 2009, Granada, Spain. Master Universitario in Biotecnologia, University of Granada.

June

  • Stringfellow, W.T., Graham, J., Rogers, M., Borglin, S., Brunell, M., Hanlon, J., Spier, C., and Nguyen, K., 2009. Water Quality Changes Occuring in Agricultural Drains of Varying Riparian Function, AEES Conference, Corvallis, OR, June 2009.

  • Spier, C., Hanlon, J., Graham, J., Nguyen, K., Borglin, S., Stringfellow, W.T., 2009. The Potential for a Riparian Corridor in California’s San Joaquin Valley, AEES Conference, Corvallis, OR, June 2009

  • Stringfellow, W.T., Hanlon, J., Borglin, S., Rogers, M., Markel, J., Linneman, C., and Klassen, P., 2009. Evaluation of Riparian Areas, Ponds, and Wetlands as BMPs for Mitigating the Water Quality Impacts of Irrigated Agriculture in the San Joaquin Valley, ASABE Conference, Reno, NV, June 2009

  • Holman, H.-Y.N. “Case Study: The Bio-Geological Interface – Microbes”, Canadian Light Source Saskastoon Summer School, Saskatoon, Saskatchewan, Canada, June, 2009.

  • M.E. Conrad, E.L. Brodie, C.W. Radtke, M. Bill, M.E. Delwiche , M.H. Lee, D.L. Swift , F.S. Colwell. Isotopic evidence for TCE co-metabolism stimulated by electron donor addition to groundwater. Goldschmidt 2009, Davos, Switzerland, June 2009.

  • Hazen, T. C. Invited. EBI Microbial Enhanced Hydrocarbon Recovery. June 2009, Urbana/Champagne, IL. Environmental Bioenergy Institute Annual Retreat.

  • Hazen, T. C., B. K. Fouke, and J. D. Coates. Contributed. EBI Microbial Enhanced Hydrocarbon Recovery. June 2009, Urbana/Champagne, IL. Environmental Bioenergy Institute Annual Retreat.

  • Skerker, J., A. Deutschbauer, P. Novichkov, A. Gerasimova, J. Mar, K. Wetmore, J. Baumohl, M. Price, P. Dehal, J. Kuehl, C. Wu, I. Dubchak, T. C. Hazen, A. P. Arkin. Invited. An idiosyncratic view of Fuel Synthesis Challenges. June 2009, Urbana/Champagne, IL. Environmental Bioenergy Institute Annual Retreat.

  • Skerker, J., A. Deutschbauer, J. Mar, K. Wetmore, M. Price, P. Dehal, J. Baumohl, I. Dubchak, T. C. Hazen, A. P. Arkin. Contributed. A systems biology approach for optimizing biofuel production in Zymomonas mobilis. June 2009, Urbana/Champagne, IL. Environmental Bioenergy Institute Annual Retreat.

  • Hazen, T. C. Invited. Life in the Slow Lane: Ecogenomics of an Extreme Environment. June 2009, Uppsala, Sweden. BAGECON 10 International Conference.

  • Hazen, T. C. Invited. Metagenomics of Soil Rain Forest. June 2009, Uppsala, Sweden. Terragenome Workshop.

  • Godoy-Vitorino, Goldfarb, K.C., Brodie, E.L. , Garcia-Amado, M.A., Michelangeli, F., and M.G. Domínguez-Bello. Developmental changes in the Hoatzin crop bacterial ecosystem. 10th International Symposium on Bacterial Genetics and Ecology, Uppsala, Sweden, June 2009.

  • Bradbury, D., Dubinsky, E., Brodie, E.L., Placella, S., Herman, S., DeAngelis, K., Balser, T., Firestone, M.K. Microbial communities as transducers of ecosystem response to climate change. 10th International Symposium on Bacterial Genetics and Ecology, Uppsala, Sweden, June 2009.

  • D. Bradbury, E. A. Dubinsky, E.L. Brodie, S. Placella, K. DeAngelis, T. Balser and M.K. Firestone. Microbial Communities as tranducers of ecosystem response to climate change. 10th International Symposium on Bacterial Genetics and Ecology. June 2009, Uppsala, Sweden.

  • Holman, H.-Y. N. Invited lecture: “Case Study: The Bio-Geological Interface – Microbes”, Canadian Light Source Saskatoon Summer School, Saskatoon, Saskatchewan, Canada, June, 2009.

  • Holman, H.-Y. N. Invited lecture: “Bioavailability: a Risk Assessment “National Student Leadership Council, June, 2009.

  • Wessen, E., K. Nyberg, J.K. Jansson and S. Hallin. Enrivonmental controls on ammonia oxidizing bacteria and archaea in soil under different long-term management practices. 10th International Symposium on Bacterial genetics and ecology (BAGECO-10) June 15-19, 2009, Uppsala, Sweden. Poster.

  • Arthurson, V., D. Baggesen, K. Brankatschk, A. Dalsgaard, B. Duffy, C. Fenzl, J.K. Friedel, E. Hackl, A. Hartmann, F. Hedin, A. Hofmann, J.K. Jansson, A.N. Jensen, L. Jaderlund, M. Klerks, M. Koller, P. Mader, T. Rinnofner, M. Schmid, C. Storn, A.H.C. van Bruggen, F. Widmer, G.S. Wyss, C.A. Zijlstra and A. Sessitch. Incidence of thermophilic campylobacter spp. In animal manure and organically produced vegetables. 10th International Symposium on Bacterial genetics and ecology (BAGECO-10) June 15-19, 2009, Uppsala, Sweden. Poster.

  • Dicksved, J., B. Willing, J. Halfvarson, A. Andersson, G. Jarnerot, C. Tysk, L. Engstrand and J.K. Jansson. Dysbiosis in the microbiota of twins is correlated with inflammatory bowel disease. 10th International Symposium on Bacterial genetics and ecology (BAGECO-10) June 15-19, 2009, Uppsala, Sweden. Contributed oral.

  • David, M., E. Navarro, J.K. Jansson and T.M. Vogel. Comparison between total and active bacterial communities in soil contaminated by chlorinated compounds using pyrosequencing and microarrays. 10th International Symposium on Bacterial genetics and ecology (BAGECO-10) June 15-19, 2009, Uppsala, Sweden. Poster.

  • J.K. Jansson. Exploring the human environment using a combination of omics approaches. 3rd Congress of European Microbiologists (FEMS 2009). June 28-July 2, 2009. Gothenburg, Sweden. Invited oral.

  • Kelly, L., A. Herrera, K. Olsson-Francis, G. Andersen, Y. Piceno, and C. Cockell. A Geobiological Comparison of High- and Low-Silica Containing weathered Volcanic Glass. June 2009, Davos, Switzerland. Goldschmidt 2009, Challenges to Our Volatile Planet.

  • Tsiamis, G., A. Chamalaki, N. Krypides, Y. Piceno, G. Andersen, K. Bourtzis. Microbial Community Analysis of a Meromictic Lagoon in Western Greece. June 2009, Uppsala, Sweden. BAGECON 10 International Conference.

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May

  • Faybishenko*, B., T. C. Hazen, and S. S. Hubbard. Invited. Application of Innovative Bioremediation Technologies for Metals and Radionuclides in Soils and Groundwater. May 2009, Astana, Kazakhstan. IAEA International Conference on Remediation of Land Contaminated by Radioactive Material Residues.

  • Zhou*, J., and T. C. Hazen*. Invited co-convener. High Throughput Genomic Technologies for Complex Microbial Community Analysis. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • He, Z., Y. Deng, J. D. Van Nostrand, L. Wu*, C. L. Hemme, T. J. Gentry, J. Liebich, Q. Tu, A. P. Arkin, T. C. Hazen, and J. Zhou. Contributed. Development and Applications of GeoChip 3.0 for Analysis of Microbial Community Structures, Compositions, and Potential Functions. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Zhou, A., Z. He, G. M. Zane, C. Hemme, Y. Chen*, A. P. Arkin, T. C. Hazen, J. D. Wall, and J. Zhou. Contributed. Study of Global Gene Regulation by CRP/FNR in Desulfovibrio vulgaris Hildenborough. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Elias*, D. A., M. Auer, M. D. Biggin, G. Butland, S. Chhabra, A. Fagorala, T. C. Hazen, D. Jorgans, D. C. Joyner, T. R. Juba, M. Perez, J. P. Remis, A. Tauscher, and J. D. Wall. Contributed. Protein Complex Analysis Project (PCAP): Localization of Multi-Protein Complexes through SNAP-Tag Labeling. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Kang*, S., H. L. Gough, J. Van Nostrand, Z. He, L. Wu, D. A. Stahl, T. C. Hazen, and J. Zhou. Contributed. Controlling Factors of Sediment Microbial Communities at the Metal Contaminated Freshwater Lake (Lake DePue). May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Wu*, L. Y., J. P. Xie, Y. Q. Luo, J. D. Van Nostrand, R. A. Sherry, Z. L. He, T. C. Hazen, and J. Z. Zhou. Contributed. The Responses of the Underground Microbial Communities of Grassland to the Global Warming and Different Land-use Practices Revealed by GeoChip and Pyrosequencing Analyses. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Brileya*, K. A., C. B. Walker, S. Stolyar, D. A. Stahl, A. P. Arkin, T. C. Hazen, and M. W. Fields. Contributed. Temporal and Spatial Organization within a Syntrophic Bacterial-Archaeal Biofilm. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Chhabra*, S. R., G. Butland, D. Elias, V. Fok, R. Prathapam, T. Juba, J-M. Chandonia, E. Witkowska, T. C. Hazen, J. Wall, and J. Keasling. Contributed. A High Throughput Genetics Pipeline for Identifying Protein-Protein Interactions in Desulfovibrio vulgaris Using Tandem-affinity Purification. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Van Nostrand, J. D., P. Waldron, D. B. Watson, Z. He, L. Wu, P. Jardine*, T. C. Hazen, and J. Zhou. Contributed. GeoChip Analysis of Groundwater Microbial Communities across a Gradient of pH, Heavy Metal, and Nitrate Contamination. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Van Nostrand, J. D., P. J. Waldron*, W. Wu, L. Wu, Y. Deng, J. Carley, Z. He, C. S. Criddle, P. Jardine, T. C. Hazen, and J. Zhou. Contributed. GeoChip-based Analysis of Functional Microbial Communities in a Bioreduced Uranium-contaminated Aquifer during Nitrate Exposure. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Ray*, J., E. Luning, A. Deutschbauer, K. Keller, J. Robertson, G. Zane, M. Price, S. Chhabra, J. Wall, A. Arkin, T. C. Hazen, J. Keasling, and A. Mukhopadhyay. Contributed. Study of Two-component Signal Transduction Systems in Desulfovibrio vulgaris Hildenborough. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • DeAngelis*, K. M, W. L. Silver, and T. C. Hazen. Contributed. Identification and Characterization of Lignocellulolytic Microbial Communities in Puerto Rican Wet Tropical Forest Soils. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Hemme*, C. L., Y. Deng, T. J. Gentry, M. W. Fields, L. Wu, K. Barry, S. Green-Tringe, D. B. Watson, Z. He, T. C. Hazen, J. M. Tiedje, E. M. Rubin, and J. Zhou. Contributed. Analysis of a Microbial Metagenome from a Pristine Groundwater Ecosystem. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Wu*, L. Y., J. D. Van Nostrand, T. J. Gentry, Z. J. Huang, C. W. Schadt, W. M. Wu, D. Watson, M. W. Fields, C. S. Criddle, J. Tiedje, T. C. Hazen, and J. J. Zhou. Contributed. Microbial Community Dynamics and the Effect of Geochemistry in Uranium Bioremediation Revealed by Functional Gene Array Analysis. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Zhou*, A., Z. He, M. J. Joachimiak, P. S. Dehal, A. Pl Arkin, K. Hillesland, D. Stahl, J. Wall, T. C. Hazen, and J. Zhou. Contributed. Genetic Adaptation to Salt Stress during the Long-Term Evolution of Desulfovibrio vulgaris Hildenborough. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Wu*, C. H., B. Sercu, L. C. Van De Werfhorst, T. Z. DeSantis, E. L. Brodie, T. C. Hazen, G. L. Andersen, and P. A. Holden. Contributed. Bacterial Biogeography of an Urban Creek Impacted with Fecal Pollution. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology Meeting.

  • Martinez*, R. J., M. J. Beazley, C. H. Wu, G. L. Andersen, T. C. Hazen, M. Taillefert, and P. A. Sobecky. Contributed. Microbial Phosphatase Activity Involved in Subsurface Uranium Sequestration. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology.

  • Chakraborty*, R., J. Fortney, A. Zhou, M. Joachimiak, S. Borglin, A. Mukhopadhyay, Z. He, A. P Arkin, J. Zhou, T. C Hazen. Contributed. Investigation of salt stress responses in the metal reducing organism Geobacter metallireducens. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology.

  • Kozina*, C. L., A. S. Pawate, D. Joyner, K. L. Sale, D. S. Reichmuth, T. C. Hazen, and R. Sapra. Contributed. Metabolic engineering of a novel thermophilic ethanologen Geobacillus thermoglucosidasius M10EXG for enhanced ethanol production. May 2009, San Francisco, CA. 31st Symposium on Biotechnology for Fuels and Chemicals, Society for Industrial Microbiology.

  • Knierim*, B., L. Prak, S. Singh, D. Jorgens, M. Zemla, K. DeAngelis, A. P. Reddy, J. VanderGheynst, T. C. Hazen, B. M. Holmes, R. Sapra, B. A. Simmons, P. D. Adams, and M. Auer. Contributed. Electron Microscopic Imaging at JBEI. May 2009, San Francisco, CA. 31st Symposium on Biotechnology for Fuels and Chemicals, Society for Industrial Microbiology.

  • Reddy*, A. P., M. Allgaier, P. Hugenholtz, B. A. Simmons, T. C. Hazen, and J. VanderGheynst. Contributed. Tracking Microbial Community Changes during Decomposition of Switchgrass. 31st Symposium on Biotechnology for Fuels and Chemicals, Society for Industrial Microbiology.

  • La Duc, M. S. Osman, Y. Piceno, G. Andersen, P. Vaishampayan, K. Venkateswaran. Cloning and Mass Sequencing vs. DNA Microarray approaches in Elucidating Spacecraft Associated Microbial Diversity. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology.

  • Parnell, J. J., G. Rompato. G. Ganesan, L. Latta, M. E. Pfrender, D. Naftz, G. Andersen, J. VanNostrand, Z. He, J. Zhou, B. C. Weimer. Phylogentic and Functional Diversity Across an Extreme Salinity Gradient. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology.

  • Wortman, J., V. Markowitz, G. Andersen, T. DeSantis, N. Kyrpides, R. Knight, M. Giglio, O. White. A Data Analysis and Coordination Center for the Human Microbiome Project. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology.

  • He, Z., M. Xu, Y. Piceno, Y. Deng, L. Wu, Q. Tu, G. Andersen, J. Zhou. AComparitive Analysis of Microbial Community Structures, Compositions and Functional Activity in Response to Elevated CO2. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology.

  • Lee, P. K. H., N. C. VerBerkmoes, G. L. Andersen, S. H. Zinder, L. Alvarez-Cohen. Transcriptomic and Proteomic Analysis ofDehalococcoides ethenogenes Strain 195 under Nitrogen Limitation. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology.

  • Andersen, G. L. Invited. Advances in High-Density PhyloChip Technology for Understanding the Dynamics of Microbial Communities Important to Human Health. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology.

  • Cox, M. J., M. Allgaier, B. Taylor, E. L. Brodie, M. S. Baek, J. Koff, Y. J. Huang, G. L. Andersen, M. Kleinhenz, S. V. Lynch. Complex Microbial Community Structure in Adult Cystic Fibrosis Airways as Revealed by 16S rRNA PhyloChip Analysis. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology.

  • Goh, E.-B., J. D. Keasling, and H. R. Beller. Whole-genome transcriptional analysis of the alkene-producing bacterium Micrococcus luteus. Poster at the 109th General Meeting of the American Society for Microbiology, Philadelphia, PA, May, 2009.

  • Brodie, E. L., C. A. Santee, U. Karaoz, R. Han, H. R. Beller. 2009. Microbial community dynamics under changing electron-accepting conditions in chromium-reducing, aquifer-derived microcosms. Poster at the 109th General Meeting of the American Society for Microbiology, Philadelphia, PA, May, 2009.

  • E. L. Brodie, U. Karaoz, K. Goldfarb, Z. Gao , M. J. Blaser . Biogeography of Bacterial Populations on Healthy Skin. Presented at the American Society for Microbiology, Philadelphia, May 2009.

  • K. C. Goldfarb, C. A. Hanson, U. Karaoz, K. K. Treseder, M. D. Wallenstein, E. L. Brodie. Combining Immunocapture and High-density Microarray Analysis to Investigate Resource Partitioning to Investigate Resource Partitioning in Soil Bacterial Communities. Presented at the American Society for Microbiology, Philadelphia, May 2009.

  • K. E. Fujimura, M. J. Cox, E. L. Brodie, D. R. Ownby, K. J. Woodcroft, C. C. Johnson, H. A. Boushey, S. V. Lynch. Comparison of Bacterial Community Composition of Dust Households with or without Pets to Determine the Link with Allergy and Asthma Development in Children. Presented at the American Society for Microbiology, Philadelphia, May 2009.

  • M. J. Cox, M. Allgaier, B. Taylor, E. L. Brodie, M. S. Baek, J. Koff , Y. J. Huang, G. L. Andersen, M. Kleinhenz, S. V. Lynch. Complex Microbial Community Structure in Adult Cystic Fibrosis Airways as Revealed by 16S rRNA PhyloChip Analysis. Presented at the American Society for Microbiology, Philadelphia, May 2009.

  • E. L. Brodie, U. Karaoz, K. Goldfarb, Z. Gao , M. J. Blaser . Biogeography of Bacterial Populations on Healthy Skin. Presented at the American Society for Microbiology, Philadelphia, May 2009.

  • E. L. Brodie, K. C. Goldfarb, C. A. Santee, U. Karaoz, R. Han, H. R. Beller. Microbial Community Dynamics under Changing Electron-Accepting Conditions in Chromium-Reducing, Aquifer-Derived Microcosms. Presented at the American Society for Microbiology, Philadelphia, May 2009.

  • K. C. Goldfarb, C. A. Hanson, U. Karaoz, K. K. Treseder, M. D. Wallenstein, E. L. Brodie. Combining Immunocapture and High-density Microarray Analysis to Investigate Resource Partitioning to Investigate Resource Partitioning in Soil Bacterial Communities. Presented at the American Society for Microbiology, Philadelphia, May 2009.

  • Hettich, R.L., A. Russell, N.C. VerBerkmoes, M. Shah, M. Lefsrud, A. Godzik, J. Jansson, C. Fraser-Liggett. Metagenomic analysis of the structure and function of the human gut microbiota in Crohn’s disease. American Society for Mass Spectrometry. May 31-June 4, 2009. Philadelphia, PA.

  • J.K. Jansson. Exploring the human environment using “omics”. Rutgers Symposium on the New Biology of Environment and Health. May 27-28, 2009. Invited oral.

  • Holman, H.-Y. N. Invited presentation: “Label-free imaging of multiple live cells”, New Frontier in Characterizing Biological Systems, Bethesda, MD, May, 2009.

  • Beller, H. R. 2009. Application of biomolecular and mass spectrometric techniques to enhance the assessment of microbially mediated Monitored Natural Attenuation of PAH. Invited talk at the U.S. EPA Workshop on the Monitored Natural Attenuation of Polynuclear Aromatic Hydrocarbons at Manufactured Gas Plant Sites. Dallas, TX, May, 2009.

  • Andersen, G. L. Invited. Advances in High-Density PhyloChip Technology for Understanding the Dynamics of Microbial Communities Important to Human Health. May 2009, Philadelphia, PA. Annual meeting of the American Society for Microbiology.

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April

  • Blakely, E.A., Thompson, A.C., Chang, P.Y., Schwarz, R.I., Bjornstad, K.A., Rosen, C.J., Homan, H.-Y.N., Holman, D. and B. Parvin. “Multicellular Crosstalk in Radiation Damage”. April 8th, 2009, Bethesda, MD. Low Dose Radiation Research Program Workshop 2009.

  • Beller, H. R., E. L. Brodie, R. Han, J. Geller, K. C. Goldfarb, C. A. Santee, and L. Yang. 2009. Use of biomolecular signatures to unravel biogeochemical reaction networks underlying chromium reduction at the Hanford 100H site. Poster at the DOE Environmental Remediation Science Program 4th Annual PI Meeting, Lansdowne, VA, April, 2009.

  • Quinn N.W.T., T.J. Lundquist., JA. Benemann. 2009. Engineering & Economic Assessment of Algae Biofuel Production. EBI review. Berkeley, CA. April 2009.

  • Daly, A., Brodie, E.L., Kim, Y. ,Wan, J., Tokunaga, T.K. Firestone, M.K. Microbial community trajectories in response to accelerated remediation of subsurface metal contaminants. April 2009, Lansdowne, VA. 4th Annual DOE-ERSP PI Meeting.

  • Beller, H.R., Brodie, E.L., Goldfarb, K.C., Han, R., Santee, C.A. Use of biomolecular signatures to unravel biogeochemical reaction networks underlying chromium reduction at the Hanford 100H site. LBNL Sustainable Systems SFA. April 2009, Lansdowne, VA. 4th Annual DOE-ERSP PI Meeting.

  • Daly, A., Brodie, E.L., Kim, Y. ,Wan, J., Tokunaga, T.K. Firestone, M.K. Microbial community trajectories in response to accelerated remediation of subsurface metal contaminants. April 2009, Lansdowne, VA. 4th Annual DOE-ERSP PI Meeting.

  • .Hazen*, T. C. and B. Faybishenko. Invited. Update on Groundwater Issues across the DOE Complex. April 2009, Lansdowne, VA. 4th Annual DOE-ERSP PI Meeting.

  • Sobecky*, P. A., R. J. Martinez, M. J. Beazley, K. Salome, C. Wu, T. C. Hazen, G. L. Andersen, S. M. Webb, and M. Taillefert. Invited. Uranium Immobilization by the Activities of Microbial Phosphatases. April 2009, Lansdowne, VA. 4th Annual DOE-ERSP PI Meeting.

  • Van Nostrand*, J. D., P. J. Waldron, M. Xu, W. Wu, L. Wu. Z. He, Y. Deng, C. Hemme, D. Watson, C. Criddle, P. Jardine, T. C. Hazen, and J. Zhou. Invited. Improvements to GeoChip 3.0 and Application for Microbial Community Analysis. April 2009, Lansdowne, VA. 4th Annual DOE-ERSP PI Meeting.

  • Hubbard*, S. S., J. Aho-Franklin, H. Beller, E. Brodie, J. Chen, J. Christensen, M. Conrad, M. Denham, D. DePaolo, B. Faybishenko, S. Finsterle, Y. Fujita, T. C. Hazen, M. Kowalsky, L. Li, P. Long, P. Nico, E. Sonnethal, N. Spycher, C. Steefel, T. Tokunaga, J. Wan, K. H. Williams, and Y. Wu. Invited. LBNL Sustainable Systems SFA. April 2009, Lansdowne, VA. 4th Annual DOE-ERSP PI Meeting.

  • Conrad*, M. E., Y. Fujita, C. H. Wu, M. Bill, K. E. Wright, S. D. Chamberlain, B. R. Lam, E. L. Brodie, P. S. Nico, N. Spycher, and T. C. Hazen. Invited. Enhanced Immobilization of Metals and Radionuclides in the Vadose Zone. April 2009, Lansdowne, VA. 4th Annual DOE-ERSP PI Meeting.

  • Hazen*, T. C., B. Faybishenko, H. Beller, E. Brodie, S. S. Hubbard, J. Peterson, E. Sonnenthal, C. Steefel, L. Yang, J. Larsen, M. Conrad, J. Christensen, S. Brown, D. Joyner, S. Borglin, J. Geller, R. Chakraborty, P. Nico, T. Tokunaga, J. Wan, M. Firestone, P. Long, D. Newcomer, and L. N’Guessan. Invited. Field-Scale Investigations of Cryptic Growth and Memory Response Hypotheses at the Chromium Contaminated Hanford 100-H Site. April 2009, Lansdowne, VA. 4th Annual DOE-ERSP PI Meeting.

  • Hazen, T. C. Invited. Systems Biology: The New Frontier for Bioenergy. April 2009, Norman, OK. Department of Microbiology, University of Oklahoma.

  • Dubinsky, E.A., C. Wu, S. Osman, J. Hulls, T. Hazen, G. Andersen. A complete microbial community approach to monitoring and source tracking coastal-zone pollution. U.S. EPA National Beach Conference. April 2009, Huntington Beach, CA.

March

  • K. E. Fujimura, M. J. Cox, E. L. Brodie, D. R. Ownby, K. J. Woodcroft, C. C. Johnson, H. A. Boushey, S. V. Lynch. Comparison of Bacterial Community Composition of Dust Households with or without Pets to Determine the Link with Allergy and Asthma Development in Children. 12th Annual Bay Area Pathogenesis Meeting, San Francisco, March 2009.

  • Quinn N.W.T. 2009. California Water and Environmental Modeling Forum, Review of workshops and model user groups. Annual Meeting, Pacific Grove. March 1-3, 2009.

  • Quinn N.W.T. 2009. Adaptive Fluid Electrical Conductivity Logging to Determine the Salinity Profiles in Groundwater Wells Serving Seasonal Managed Wetlands. Invited talk : California Groundwater Association Biannual Conference: Groundwater Salinity: A Groundwater Dilemma March 24-25, 2009 Radisson Hotel, Sacramento, CA.

  • Hazen, T. C. Invited. Systems Biology: The New Frontier for Bioenergy. March 2009, Oklahoma City, OK. NanoFocus and Bioenergy Oklahoma EPSCoR Annual State Conference 2009.

  • Hazen, T. C. Invited. Environmental Biotechnology – a Tour through the ‘Omics’. March 2009, San Diego, CA. AEHS annual west coast meeting.

  • Hazen, T. C. Invited. Systems Biology for Bioenergy. March 2009, Emeryville, CA. DOE Bioenergy Research Centers Biweekly Conference Call.

  • Andersen, G. L. Invited. Phylochip Analysis of Microbial Diversity, March 25-27, 2009 Walnut Creek, CA. JGI’s 4th Annual User Meeting

  • Andersen, G. L. Invited. Phylochip Analysis of Microbial Diversity, March 25-27, 2009 Walnut Creek, CA. JGI’s 4th Annual User Meeting

February

  • Holman, H.-Y. N. Invited lecture: “Synchrotron Infrared Spectromicroscopy of Cellulose Degradation Strategies of Living Cellulolytic Bacteria” DOE-GTL Workshop, February, 2009.

  • Holman, H.-Y. N., Hao, Z., Hu, P., Miles, R., Pisano, A., Park, I., and S. Choi “Synchrotron Infrared Spectromicroscopy of Cellulose Degradation Strategies of Living Cellulolytic Bacteria”, February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Lacayo, C. I., Holman, H.-Y. N., Hwang, M., Hiddessen, A., Malkin, A.J., and Thelen, M.P.. “Probing the Architecture of the Plant Cell Wall during Deconstruction in Single Cells from Zinnia elegans”. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Hazen, T. C. Invited. Hanford 100H Cr Bioremediation. February 2009, Richland, WA. DOE EM RO conference on 100 area Cr.

  • Hazen, T. C. Invited Keynote. A Systems Biology Approach to Bioremediation. February 2009, Winnipeg, CA. Manitoba Environmental Industry Association Meeting.

  • Hazen, T. C. Invited Keynote. Bioremediation: the Hope and the Hype. February 2009, Winnipeg, CA. Manitoba Environmental Industry Association Meeting.

  • Knierim*, B., L. Prak, S. Singh, D. Jorgens, M. Zemla, K. DeAngelis, A. Reddy, J. VanderGheynst, T. C. Hazen, B. Holmes, R. Sapra, B. Simmons, P. Adams, and M. Auer. Invited. Electron Microscopic Imaging a JBEI. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Chivian*, D., E. J. Alm, E. L. Brodie, D. E. Culley, P. S. Dehal, T. Z. DeSantis, T. M. Gihring, A. Lapidus, L.-H. Lin, S. R. Lowry, D. P. Moser, P. Richardson, G. Southam, G. Wanger, L. M. Pratt, G. L. Andersen, T. C. Hazen, F. J. Brockman, A. P. Arkin, and T. C. Onstott. Invited. Environmental Genomics Reveals a Single-Species Ecosystem Deep Earth. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Ramsay*, B., C. Hwang, S. Carroll, A. Lapidus, J. C. Detter, C. Han, M. Land, L. Hauser, T. C. Hazen, A. Arkin, A. Beliaev, R. Sanford, F. Löeffler, and M. W. Fields. Invited. Characterization of Metal-Reducing Communities and Isolates from Uranium-Contaminated Groundwater and Sediments. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Brileya*, K., C. Walker, S. Stolyar, D. A. Stahl, A. P. Arkin, T. C. Hazen, and M. W. Fields. Invited. Temporal and Spatial Organization within a Syntrophic Bacterial-Archaeal Biofilm. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Elias*, D. A., Elliott C. Drury, A. M. Redding, A. Mukhopadhyay, M. Joachimiak, H.-C. B. Yen, M. W. Fields, T. C. Hazen, A. P. Arkin, J. D. Keasling, and J. D. Wall. Invited. Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Zhou*, A., Z. He, M. P. Joachimiak, P. S Dehal, A. P. Arkin, K. Hillesland, D. Stahl, J. Wall, T. C. Hazen, and J. Zhou. Invited. The molecular mechanism of adaptation to salt stress revealed by the long-term evolution of Desulfovibrio vulgaris Hildenborough. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • He*, Q., Z. He, D. C. Joyner, M. Joachimiak, M. N. Price, Z. K. Yang, H.-C. B. Yen, C. L. Hemme, R Chakraborty, W. Chen, M. M. Fields, D. A. Stahl, J. D. Keasling, M. Keller, A. P. Arkin, T. C. Hazen, J. D. Wall, and J. Zhou. Invited. Impact of Elevated Nitrate on Sulfate-Reducing Bacteria: Implications of inhibitory mechanisms in addition to osmotic stress. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • He, Z., A. Zhou*, Q. He, A. Mukhopadhyay, E. Baidoo, M. Joachimiak, C. L. Hemme, P. Benke, A. M. Redding, M. M. Fields, D. A. Stahl, J. D. Keasling, A. P. Arkin, T. C. Hazen, J. D. Wall, and J. Zhou. Invited. Desulfovibrio vulgaris Hildenborough responses to salt and H2O2 stresses. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Van Nostrand*, J. D., L. Wu, P. Waldron, Ye Deng, Z. He, W. Wu, S. Carroll, C. Schadt, A. Palumbo, D. Watson, C. Criddle, P. Jardine, T. C. Hazen, and J. Zhou. Invited. Applications of GeoChip for analysis of different microbial communities. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Deutschbauer, A., J. Kuehl*, M. Price, P. Dehal, T. C. Hazen, and A. P. Arkin. Invited. The development and application of an integrated functional genomics platform in Desulfovibrio desulfuricans G20. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Dehal*, P. S., E. J. Alm, D. Chivian, K. H. Huang, M. P. Joachimiak, K. Keller, M. N. Price, R Chakraborty, M. W. Fields, J. Zhou, D. A. Stahl, J. D. Wall, A. P. Arkin, and T. C. Hazen. Invited. Comparative Sequencing and Analysis of Multiple Desulfovibrio and Other Sulfate Reducing Species. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Auer, M., M. D. Biggin, G. Butland, S. Chhabra, D. A. Elias*, A. Fagorala, T. C. Hazen, D. Jorgens, D. C. Joyner, T. R. Juba, M. Perez, J. P. Remis, A. Tauscher, and J. D. Wall. Invited. Protein Complex Analysis Project (PCAP): Localization of Multi-Protein Complexes through SNAP-Tag Labeling. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Chhabra, S., G. Butland*, D. Elias, V. Fok, R. Prathapam, T. Juba, J.-M. Chandonia, E. Witkowska, M. Biggin, T. C. Hazen, J. D. Wall, and J. D. Keasling. Invited. A high throughput pipeline for identifying protein-protein interactions in Desulfovibrio vulgaris using tandem-affinity purification. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Walian*, P. J., S. Allen, L. Zeng, E. Szakal, E. Johansen, S. C. Hall, S. J. Fisher, M. E. Singer, C. Park, T. C. Hazen, H. E. Witkowska, M. D. Biggin, and B. K. Jap. Invited. Protein Complex Analysis Project (PCAP): Isolation and Identification of Membrane Protein Complexes from D. vulgaris. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Dong, M., M. Daly, H. Liu, S. Allen, E. Szakal, S. C. Hall, S. J. Fisher, T. C. Hazen, J. T. Geller, M. E. Singer, L. L. Yang, J. Jin, H. E. Witkowska*, and M. D. Biggin. Invited. Analysis of an Intact Dissimilatory Sulfite Reductase Protein Complex from Desulfovibrio vulgaris using an Ion Mobility QTOF Analyzer. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Liu*, H., L. Yang, N. Khainovski, M. Dong, E. D. Szakal, M. Choi, S. Allen, T. C. Hazen, J. T. Geller, M. E. Singer, P. Walian, B. Jap, S. C. Hall, S. J. Fisher, H. E. Witkowska, J. Jin, and M. D. Biggin. Invited. Protein Complex Analysis Project (PCAP): Introduction of Iterative MS/MS Acquisition (IMMA) to the MALDI LC MS/MS Workflow To Enable High Throughput Protein Complex Identification using Tagless Strategy. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Dong*, M., H. Liu, L. Yang, M. Choi, E. D. Szakal, S. Allen, S. C. Hall, S. J. Fisher, G. Butland, T. C. Hazen, J. T. Geller, M. E. Singer, P. Walian, B. Jap, J. Jin, J.-M. Chandonia, H. E. Witkowska, and M. D. Biggin. Invited. Protein Complex Analysis Project (PCAP): Protein Complex Purification and Identification by ”Tagless” Strategy. February 2009, Bethesda, MD. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • DeAngelis*, K. M., W. L. Silver, J. Fortney, and T. C. Hazen. Invited. Discovery and Optimization of Lignocellulolytic Bacteria from Puerto Rican Rainforest Soils. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Hazen*, T. C., G. Anderson, S. Borglin, E. Brodie, S. van Dien, M. Fields, J. Fortney, J. Geller, E. Hendrickson, K. L Hillesland, H.-Y. Holman, J. Leigh, T. Lie, J. Jacobsen, D. Joyner, R Chakraborty, M. Keller, A. Mukhopadhyay, C. Schadt, D. Stahl, S. Stolyar, C. Walker, J. Wall, Z. Yang, H.-C. B. Yen, G. Zane, and J. Zhou. Invited. Applied Environmental Microbiology Core Research on Stress Response Pathways in Metal-Reducers VIMSS:ESPP. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Hazen*, T. C., P. Hugenholtz, S. Singer, J. VanderGheynst, P. M. D’haeseleer, M. P. Thelen, K. DeAngelis, A. Reddy, M. Allgaier, J. Fortney, G. Andersen, T. DeSantis, E. Brodie, C. Wu, D. Goodheart, M. Firestone, W. Silver, and B. Simmons. Invited. JBEI Microbial Communities Deconstruction Research Activities. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Hazen*, T. C., H.-Y. Holman, J. Keasling, A. Mukhopadhyay, S. Chhabra, J. T. Geller, M. Singer, D. Joyner, L. Camp, T. Torok, J. Wall, D. Elias, and M. D. Biggin. Invited. Protein Complex Analysis Project (PCAP): High Throughput Identification and Structural Characterization of Multi-Protein Complexes during Stress Response in Desulfovibrio vulgaris: Microbiology Subproject. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Meagher*, R. J., M. Z. Hadi, Y. K. Light, P. Dehal, T. C. Hazen, A. P. Arkin, and A. K. Singh. Invited. Microfluidic tools for single-cell genomic analysis of environmental bacteria. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Miller*, L. D., A. Venkateswaran, J. Mosher, M. Drake, Z.K. Yang, M. Rodriguez, S.D. Brown, T. J. Phelps, M. Podar, A. V. Palumbo, C. W. Schadt, M. Keller, D. C. Joyner, T. C. Hazen, S. Stolyar, K. Hillesland, and D.A. Stahl. Invited. Development and Analysis of Multispecies Consortia to Study Microbial Community Stress and Survival. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Allgaier*, M., A. Reddy, J. VanderGheynst, A. Copeland, V. Kunin, P. D’haeseleer, K. DeAngelis, J. Fortney, D. Chivian, P. S. Dehal, B. Simmons, T. C. Hazen, and P. Hugenholtz. Invited. Metagenomic Characterization of Compost and Rain Forest Soil Microbial Communities. February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Mukhopadhyay*, A., E. Luning, J. Ray, A. Deutschbauer, K. Keller, J. Robertson, G. Zane, M. Price, S. Chhabra, J. Wall, A. P. Arkin, T. C. Hazen, and J. Keasling. Invited. ESPP2: Study of Two component signal transduction systems in Desulfovibrio vulgarisHildenborough. February 2009, Washington, DC. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

  • Baidoo, E., H. R. Beller, et al. 2009. The Fuels Synthesis Division of the Joint BioEnergy Institute (JBEI). Poster at the DOE Genomics:GtL Workshop, Bethesda, MD, February, 2009.

  • Andersen, G. L. Invited. Phylogenetic Microarrays for Analysis of Microbial Community Dynamics. February 2009, UC Davis, CA. Department of Plant Pathology 290 Seminar Speaker.

  • Brodie, E., J. Pett-Ridge, P. Webber, G. Andersen, M. Blackwell, N. Nguyen, S. Gross, and P. Hoeprich. Profiling Microbial Identity and Activity: Novel Applications of NanoSIMS and High Density Microarrays February 2009, Bethesda, MD. Genomics:GTL Contractor-Grantee Workshop VII, USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009.

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