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2008 Publications

  1. Beller, H.R., T. C. Leger, F. Bourguet, T.E. Letain, S.R. Kane, and M. A. Coleman, Identification of c-type cytochromes involved in anaerobic, bacterial U(VI) oxidation, Biodegredation, v. 20, 45-53, 2009.
  2. Borglin, S., D. Joyner, J. Jacobsen, A. Mukhopadhyay, and T. Hazen, Overcoming the anaerobic hurdle in phenotypic microarrays: Generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough. Journal of Microbiological Methods, 76 (2), 159–168, 2009.
  3. Borglin, S., J. Shore, H. Worden, and R. Jain, An overview of the sustainability of solid waste management at military installations.  International Journal of Environmental Technology and Management (in press), August 2009.
  4. Elias, D., E. Drury, A. Redding, A. Mukhopadhyay, H.-C. Yen, M. Fields, T. C. Hazen, A. P. Adam, J. Keasling, and J. Wall, Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation. Nucleic Acids Research 37, 2926–2939, 2009.
  5. Han, B.-G., M. Dong, H. Liu, L. Camp, J. Geller, M. Singer, T. C. Hazen, M. Choi, H. E. Witkowska, D. A. Ball, D. Typke, K. H. Downing, M. Shatsky, S. E. Brenner, J.-M. Chandonia, M. D. Biggin, and R. M. Glaeser, Survey of large protein complexes in Desulfovibrio vulgaris reveals great structural diversity.   Proceedings of the National Academy of Sciences (PNAS) (in press), published online September 2009
  6. Hazen, T. C. e., 4th Annual DOE-ERSP PI Meeting: Abstracts. LBNL Report, Landsdowne, VA. April 20–23, 2009.
  7. Hazen, T. C., Cometabolic bioremediation. In: Handbook of Hydrocarbon Microbiology: Microbial Interactions with Hydrocarbons, Oils, Fats, and Related Hydrophobic Substrates and Products. K. N. Timmis (Editor) Springer Verlag, 2009.
  8. Hazen, T. C., In situ groundwater bioremediation. In: Handbook of Hydrocarbon Microbiology: Microbial Interactions with Hydrocarbons, Oils, Fats, and Related Hydrophobic Substrates and Products. K. N. Timmins (Editor) Springer Verlag, 2009.
  9. Hazen, T.C., Biostimulation. In: Handbook of Hydrocarbon Microbiology: Microbial Interactions with Hydrocarbons, Oils, Fats, and Related Hydrophobic Substrates and Products (in press), K.N. Timmis, ed., Springer Verlag, 2009.
  10. Hazen, Terry C., Romy Chakraborty, James M. Fleming, Ingrid R. Gregory, John P. Bowman, Luis Jimenez, Dai Zhang, Susan M. Pfiffner, Fred J. Brockman, and Gary S. Sayler, Use of gene probes to assess the impact and effectiveness of aerobic in situ bioremediation of TCE. Arch. Microbiol., 191, 221–232, 2009.
  11. Holman, H.-Y., E. Wozei, Z. Lin, L. Comolli, D. Ball, S. Borglin, M. Fields, T.C. Hazen, and K. Downing, Real-time molecular monitoring of chemical environment in obligate anaerobes during oxygen adaptive response. Proceedings of the National Academy of Sciences, published online June 2009.
  12. Hjort, K., M. Bergström, M.F. Adesina, J.K Jansson, K. Smalla, and S. Sjöling, Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen suppressive soil.  FEMS Microbiology Ecology (in press), 2009.
  13. Hubbard, S.S., et al., Contaminant remediation.  In: Subsurface Sensing, Chapter 10, John Wiley, New York, 2009.
  14. Melton, S. J., H. Yu, M.F. Ali, K.H. Williams, M.J. Wilkins, P.E. Long, and D.A. Blake (2008), Detection of hexavalent uranium with inline and field-portable immunosensors, in Uranium, Mining and Hydrogeology, edited by B. J. M. a. A. Hasche-Berger, Springer-Verlag, Berlin.
  15. Mouser, P. J., A. Lucie N’Guessan, Hila Elifantz, Dawn E. Holmes, Kenneth H. Williams, Michael J. Wilkins, Philip E. Long, and Derek R. Lovley (2009), Impact of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater, Environ. Sci. & Technol., 43, 4386-4392.
  16. Navarre-Sitchler, A., C.I. Steefel, L. Yang, L. Tomutsa, and S.L. Brantley, Evolution of porosity and diffusivity associated with chemical weathering of a basalt clast.  Journal of Geophysical Research (in press), 2009.
  17. N’Guessan, L.A., H. Elifantz1, K.P. Nevin1, P.J. Mouser, B. Methe, T. L. Woodard, K. Manley, K.H. Williams, M.J. Wilkins, J.T. Larsen, P.E. Long, and D.R. Lovley,  Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer. ISME Journal (in press), 2009.
  18. Revil A., C.A. Mendonça, E.A. Atekwana, B. Kulessa, S.S. Hubbard, and K. Bohlen, Understanding biogeobatteries: Where geophysics meets microbiology.  Journal of Geophysical Research–Biogeosciences (in press), 2009.
  19. Nico, P. S., B.D. Stewart, and S. Fendorf, Incorporation of oxidized uranium into Fe (hydr)oxides during Fe(II) catalyzed remineralization.  Environ. Sci. & Technol., 43 (19), 7391–7396, 2009.
  20. Slater, L., E Atekwana, S. Brantley, Y. Gorby, S. S. Hubbard, R. Knight, D Morgan, A. Revil, S. Rossbach, and N. Yee, Exploring the geophysical signatures of microbial processes.  EOS, 2009.
  21. Steefel, C., and K. Maher, Fluid-rock interaction: A reactive transport approach.  Reviews in Mineralogy and Geochemistry, 70, 2009.Stewart, B.D., P.S. Nico, and S. Fendorf, Stability of uranium incorporated into Fe(hydr)oxides under fluctuating redox conditions.  Environmental Science & Technology, 43(13), 4922–4927, 2009.
  22. Tokunaga, T.K., Y. Kim, and J. Wan, Potential remediation approach for uranium-contaminated groundwaters through potassium uranyl vanadate precipitation. LBNL-2688E. Environ. Sci. Technol.43 (14), 5467–5471, DOI: 10.1021/es900619s, 2009
  23. Tokunaga, TK., J. Wan, Y. Kim, S.R. Sutton, M. Newville, A. Lanzirotti, W. Rao, "Real-Time X-ray Absorption Spectroscopy of Uranium, Iron, and Manganese in Contaminated Sediments During Bioreduction," Environ. Sci. Technol., 42(8), 2839-2844 (2008). Press Article.
  24. Tufano, K.J., S.G. Benner, K.U. Mayer, M.A. Marcus, P.S. Nico, and S. Fendorf , Aggregate-scale heterogeneity in iron (hydr)oxide reductive transformations. Vadose Zone Journal, 8 (4) , 1004­–1012, 2009.
  25. Van Nostrand, J. D., W.-M. Wu, L. Wu, Y. Deng, J. Carley, S. Carroll, Z. He, B. Gu, J. Luo, C. S. Criddle, D. B. Watson, P. M. Jardine, J. M. Tiedje, T. C. Hazen, and J. Zhou, GeoChip-based analysis of functional microbial communities in a bioreduced uranium-contaminated aquifer during reoxidation by oxygen.  Environ. Microbiol. (in press), doi:10.1111/j.1462-2920.2009.01986.x, 2009.
  26. Waldron, P.J., L. Wu, J.D. Van Nostrand, C.W. Schadt, D.B. Watson, P.M. Jardine, A.V. Palumbo, T.C. Hazen, and J. Zhou, Functional gene array-based analysis of microbial community structure in groundwaters with a gradient of contaminant levels.   Environ. Sci. & Technol., 43, 3529–3534, 2009.
  27. Walker, C. B., S. Stolyar, D. Chivian, N. Pinel, J.A. Gabster, P.S. Dehal, Z. He, Z. Koo Yang, H.-C. B. Yen, J. Zhou, J.D. Wall, T.C. Hazen, A.P. Arkin, and D.A. Stahl, Contribution of mobile genetic elements to Desulfovibrio vulgaris genome plasticity.   Environmental Microbiology, 11 (9), doi:10.1111/j.1462-2920.2009.01946.x, 2009.
  28. Wan, J., Y. Kim, T.K. Tokunaga, Z. Wang, S. Dixit, C.I. Steefel, E. Saiz, M. Kunz and N. Tamura, Spatially resolved U(VI) partitioning and speciation: Implications for plume scale behavior of contaminant U in the Hanford vadose zone, Environ. Sci. Tech. DOI: 10.1021/es802801b, 2009.
    Wu, Yuxin, R. Versteeg, L. Slater, and D. LaBrecque, Calcite precipitation dominates the electrical signatures of zero valent iron columns under simulated field conditions.  Journal of Contaminant Hydrology 106 (3-4), 131-143, 2009.
  29. Wilkins, M.J., N.C. VerBerkmoes, K.H. Williams, S.J. Callister, P.J. Mouser, H. Elifantz, A.L. N’Guessan, B.C. Thomas, C.D. Nicora, M.B. Shah, P. Abraham, M.S. Lipton, D.R. Lovley, R.L. Hettich, P.E. Long, and J.F. Banfield, Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation. LBNL-2715E. Applied and Environmental Microbiology, 75 (20), 6591–6599, 2009.
  30. Williams, K.H., A. Kemna, M. Wilkins, J. Druhan, E. Arntzen, L. N’Guessan, P.E. Long, S.S. Hubbard, and J.F. Banfield, Geophysical monitoring of coupled microbial and geochemical processes during stimulated subsurface bioremediation.  Environ. Sci. Technol., 43, 6717–6723, DOI 10.1021/es900855j, 2009

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