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Environmental Remediation Scientific Program: Research Summaries 2004-2005

Program Overview
Susan Hubbard

Real-Time PCR with Reverse Transcription for Quantification of Chlorinated Solvent Degradation
Lisa Alvarez-Cohen and Terry Hazen

Development of Environmental Biosensors for Endocrine Disruptes
Sharon Borglin, Eleanor Wozei, Bailey Green, William Stringfellow, and Chris Campbell

Environmental Lipidomics of Microbial Community Sructure and Funcion
Sharon Borglin, Terry Hazen, Aindrila Mukhopadhyay, and Eric Alm

Phenotypic Microarray Analysis for Phenomics and Pathway Analyses in Anaerobes
Sharon Borglin, Terry Hazen, Dominique Joyner, Rick Huang, and Jeff Carlson

Bioreoxidation of Uranium from the Oak Ridge Y-12 Site: Microbial Community Structure and Function
Eoin Brodie, Todd DeSantis, Joern Larsen, Dominique Joyner, Seung Baek, ?Tetsu Tokunaga, Jiamin Wan, Terry Hazen, Gary Andersen, Paul Richardson, Don Herman, and Mary K. Firestone

Ecogenomic Analysis of Very Deep Subsurface Environments as Analogues to Life on Mars
Eoin Brodie, Gary Andersen, Paul Richardson, Eric Alm, Terry Hazen, Fred Brockman, Tom Gihring, David Culley, TC Onstott, Duane Moser, Li-Hung Lin, Thomas Pray, and Lisa Pratt

Characterization of Fracture Zonation Using Seismic Data and MCMC Methods
Jinsong Chen, Susan Hubbard, and John Peterson

Unraveling the History of Uranium Contamination to the Vadose Zone in the T-WMA, Hanford Site, Washington
John N. Christensen, P. Evan Dresel, R. Jeff Serne, Mark Conrad, and Donald J. DePaolo

Tracing Sources of Uranium to the Hanford Reach of the Columbia River
John N. Christensen, P. Evan Dresel, Mark Conrad, Gregory W. Patton and Donald J. DePaolo

Nanotechnology and Environmental Policy: Analysis of Funding and Outcomes
Katherine Dunphy Guzmán, Margaret Taylor1, and Jillian Banfield; 1University of California, Berkeley, California

DOE Environmental Management International Projects Highlights
Boris Faybishenko

Biological Treatment of Irrigation Drainage for Selenium Removal
F. Bailey Green, Naoko Abe, Sharon E. Borglin, Jacob Davis, Tryg J. Lundquist, Nigel W.T. Quinn, Mengmeng Zhang, and William J. Oswald

Field Investigations of Lactate-Stimulated Bioreduction of Cr(VI) to Cr(III) at the Hanford 100-H Area
Terry C. Hazen, Boris Faybishenko, Dominique Joyner, Sharon Borglin, Eoin Brodie, Mark Conrad, Tetsu Tokunaga, Jiamin Wan, Susan Hubbard, Ken Williams, John Peterson, and Mary Firestone

VIMSS: Large-Scale Biomass Production of Obligate Anaerobes for Simultaneous Transcriptomics, Proteomics, Metabolomics, and Lipidomics Analysis
Terry Hazen, Rick Huang, Dominique Joyner, Sharon Borglin, Jil Geller, and Natalie Katz

Geophysical Monitoring of Amendment Distribution and Reactivity During a Cr(VI) Bioreduction Experiment at the Hanford 100H Site
Susan Hubbard, Ken Williams, John Peterson, Jinsong Chen, Boris Faybishenko, and Terry Hazen

Groundwater Flow Monitoring and Plume Evolution
Preston D. Jordan, Curtis M. Oldenburg, and Grace W. Su

Joint Inversion of Ground-Penetrating Radar and Hydrological Measurements
M.B. Kowalsky, S. Finsterle, J. Peterson, S. Hubbard, and E. Majer

A Multisensor System for Detection and Characterization of UXO
H. Frank Morrison, Alex Becker, J. Torquil Smith, and Erika Gasperikova

Remote Sensing Techniques for Assessing Impacts of Wetland Real-Time Water Quality Management on Wetland Seasonal Habitat
Nigel Quinn and Josephine Burns

Fluid Logging Experiments to Determine Depth Distribution of Salts Beneath Seasonally Flooded Wetlands
Nigel W.T. Quinn, Grace W. Su, and Paul J. Cook

Impact of Agricultural Non-Point-Source Pollution on Water Quality
William Stringfellow, Jeremy Hanlon, Sharon Borglin, and Nigel Quinn

Development of an Unsaturated Region Below a Perennial River
Grace W. Su, James Jasperse1, Donald Seymour1, and Jim Constantz

Interpretation of Groundwater Velocities from Heat-Based Flow Sensors
Grace W. Su, Barry M. Freifeld, Curtis M. Oldenburg, Preston D. Jordan, and Paul.F. Daley

Reoxidation of Bioreduced Uranium Under Reducing Conditions
Jiamin Wan, Tetsu Tokunaga, Eoin Brodie, Zeming Wang, Zuo ping Zheng, Don Herman,
Terry Hazen, Mary Firestone, and Stephen R. Sutton

Use of Biomarker Sequences for the Identification and Phylogenic Analysis of Filamentous Fungi Isolated from Extreme Environments
Tamas Torok, Nelli Zhdanova, Mykola Kuchuk, Glen Dahlbacka, Gary Andersen, Veronica Amaku, and Jennie Hunter-Cevera

Enhanced Bioremediation of Contaminated Groundwater at Berkeley Lab, Using Hydrogen-Release Compound®
Robert C. Trautz, Iraj Javandel, Preston D. Jordan, and Jim K. Chiu

Geochemical Evolution of Tank Waste Plumes upon Infiltrating into Sediments
Jiamin Wan and Tetsu K. Tokunaga

Noninvasive Geophysical Monitoring of Clay-Mineral Transformations During Simulated Iron Reduction
Kenneth H. Williams, Susan S. Hubbard, and Jillian F. Banfield

Sourcing Vadose Zone and Groundwater Nitrate Using Nitrate Isotopes
Katharine Woods, Michael Singleton, Mark Conrad, and Donald DePaolo

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